CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70068
CDX70866
CDX71689
CDX88899
CDX98955
CDY02580
CDY07161
CDY32642
CDY38850
CDY39879
CDY47201
CDY48492
CDY59013
CDY59025
CDY66931

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22720.1	CDY39879	AT2G25000.1	21798944
AT4G22720.1	CDY07161	AT4G00980.1	21798944
AT4G22720.1	CDY48492	AT4G00980.1	21798944
AT4G22720.1	CDX70068	AT5G06780.1	21798944
AT4G22720.1	CDX98955	AT5G06780.1	21798944
AT4G22720.1	CDX70866	AT5G19150.1	21798944
AT4G22720.1	CDX88899	AT5G19150.1	21798944
AT4G22720.1	CDY02580	AT5G19150.1	21798944
AT4G22720.1	CDY47201	AT5G19150.1	21798944
AT4G22720.1	CDY59013	AT5G19150.1	21798944
AT4G22720.1	CDY59025	AT5G19150.1	21798944
AT4G22720.1	CDY66931	AT5G19150.1	21798944
AT4G22720.1	CDX71689	AT5G51110.1	21798944
AT4G22720.1	CDY32642	AT5G51110.1	21798944
AT4G22720.1	CDY38850	AT5G51110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013635.1-P	Field mustard	cytosol	96.93	96.7
CDX82960	Canola	cytosol, mitochondrion	78.49	94.05
AT4G22720.1	Thale cress	cytosol	78.01	93.48
KRG97103	Soybean	cytosol	71.63	86.08
KRH03601	Soybean	cytosol	71.39	85.8
PGSC0003DMT400027091	Potato	cytosol	69.74	85.26
Solyc02g068750.1.1	Tomato	cytosol	69.74	85.26
GSMUA_Achr7P10790_001	Banana	cytosol	69.5	84.73
VIT_00s2082g00010.t01	Wine grape	cytosol	29.31	82.12
CDY67122	Canola	endoplasmic reticulum, extracellular	26.24	79.86
OQU77586	Sorghum	plastid	65.96	73.23
TraesCS1A01G123600.1	Wheat	plastid	65.25	72.44
Zm00001d037675_P001	Maize	extracellular	65.25	72.44
TraesCS1B01G143400.1	Wheat	plastid	65.01	72.18
TraesCS1D01G130800.1	Wheat	plastid	65.01	72.18
HORVU1Hr1G028330.1	Barley	cytosol, extracellular, mitochondrion, plastid	65.96	64.73
GSMUA_Achr10P...	Banana	cytosol	61.23	58.2
CDY20454	Canola	mitochondrion	15.84	22.04
CDY18936	Canola	mitochondrion, plastid	21.75	19.25
CDX74720	Canola	mitochondrion, plastid	20.8	18.37

Protein Annotations

KEGG:00564+2.3.1.23	MapMan:16.6.2.2.1	Gene3D:3.30.420.40	EnsemblPlants:CDX79172	ProteinID:CDX79172	ProteinID:CDX79172.1
ncoils:Coil	GO:GO:0000408	GO:GO:0002949	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00131738001	InterPro:Gcp-like_dom
InterPro:KAE1/TsaD	InterPro:Kae1/OSGEP	HAMAP:MF_01446	PFAM:PF00814	PRINTS:PR00789	PANTHER:PTHR11735
PANTHER:PTHR11735:SF14	MetaCyc:PWY-5353	MetaCyc:PWY-5368	MetaCyc:PWY-5995	MetaCyc:PWY-6433	MetaCyc:PWY-6803
MetaCyc:PWY-6958	MetaCyc:PWY-7409	MetaCyc:PWY-7416	MetaCyc:PWY-7470	MetaCyc:PWY-7618	SUPFAM:SSF53067
TIGRFAMs:TIGR00329	UniParc:UPI0004EF1A44	:	:	:	:

Description

BnaA01g12390D

Coordinates

chrLK031816:+:2145224..2147575

Molecular Weight (calculated)

47046.8 Da

IEP (calculated)

6.825

GRAVY (calculated)

-0.183

Length

423 amino acids

Sequence
(BLAST)

001: MNNIETVIQI LRDNVKQLFR EKRPVWIHRI HPASGPIPHK LIPRGPLKIW TWILVANPAP QQVQTGRACR QMKRKIAIGF EGSANKIGVG IVTSDGTILA
101: NPRHTYITPP GHGFLPRETA HHHLDHVLPL VKSALETSQL TPEDIDCICY TKGPGMGAPL QVSAIVVRVL SQLWKKPIVG VNHCVAHIEM GRVVTGADDP
201: VVLYVSGGNT QVIAYSEGRY RIFGETIDIA VGNCLDRFAR VLNLSNDPSP GYNIEQLAKK GNNFIDLPYA VKGMDVSFSG ILSYIETTAE EKLKNNECTP
301: ADLCYSLQET LFAMLVEITE RAMAHCDKKD VLIVGGVGCN ERLQDMMRTM CSERDGRLFA TDDRYCIDNG AMIAYTGLLE FVNGIETPLE ESTFTQRFRT
401: DEVHAVWREK EDLERGDKNV AAT

Best Arabidopsis Sequence Match ( AT4G22720.2 )
(BLAST)

001: MKKKMIAIGF EGSANKIGVG IVTLDGTILA NPRHTYITPP GHGFLPRETA HHHLDHVLPL VKSALETSQV TPEEIDCICY TKGPGMGAPL QVSAIVVRVL
101: SQLWKKPIVA VNHCVAHIEM GRVVTGADDP VVLYVSGGNT QVIAYSEGRY RIFGETIDIA VGNCLDRFAR VLKLSNDPSP GYNIEQLAKK GENFIDLPYA
201: VKGMDVSFSG ILSYIETTAE EKLKNNECTP ADLCYSLQET VFAMLVEITE RAMAHCDKKD VLIVGGVGCN ERLQEMMRTM CSERDGKLFA TDDRYCIDNG
301: AMIAYTGLLA FVNGIETPIE DSTFTQRFRT DEVHAVWREK EAVLLGDKKV AAN

Arabidopsis Description

Probable tRNA N6-adenosine threonylcarbamoyltransferase [Source:UniProtKB/TrEMBL;Acc:O49653]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.