CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70866
CDX88899
CDY02580
CDY47201
CDY59013
CDY59025
CDY66931

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19150.1	CDX70866	AT5G19150.1	21798944
AT5G19150.1	CDX88899	AT5G19150.1	21798944
AT5G19150.1	CDY02580	AT5G19150.1	21798944
AT5G19150.1	CDY47201	AT5G19150.1	21798944
AT5G19150.1	CDY59013	AT5G19150.1	21798944
AT5G19150.1	CDY59025	AT5G19150.1	21798944
AT5G19150.1	CDY66931	AT5G19150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02580	Canola	cytosol	96.26	96.26
Bra023708.1-P	Field mustard	cytosol	95.33	95.33
CDY59025	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	33.02	93.81
AT5G19150.1	Thale cress	plastid	91.28	80.27
CDX88899	Canola	plastid	92.21	79.78
CDX70866	Canola	plastid	88.78	77.45
CDY66931	Canola	plastid	87.23	76.5
CDY59013	Canola	plastid	80.69	75.51
PGSC0003DMT400023297	Potato	plastid	67.6	71.85
Solyc01g079860.2.1	Tomato	cytosol, extracellular, plastid	71.03	70.81
VIT_05s0020g02800.t01	Wine grape	mitochondrion	76.32	69.21
KRH02108	Soybean	cytosol	72.9	63.59
Os11t0276300-01	Rice	mitochondrion	69.47	60.11
GSMUA_Achr6P21250_001	Banana	plastid	68.85	59.41
KXG28294	Sorghum	plastid	69.47	56.17
KRH51040	Soybean	cytosol	72.9	55.71
Zm00001d049088_P002	Maize	mitochondrion	70.09	54.74
HORVU4Hr1G014230.4	Barley	mitochondrion	69.78	54.37
TraesCS4B01G082200.1	Wheat	mitochondrion	62.93	53.16
TraesCS4D01G080700.2	Wheat	plastid	63.55	52.99
TraesCS4A01G233500.1	Wheat	plastid	63.24	52.73

Protein Annotations

Gene3D:3.40.1190.20	MapMan:35.1	GO:A0A078IBI9	UniProt:A0A078IBI9	InterPro:CARKD	EnsemblPlants:CDY47201
ProteinID:CDY47201	ProteinID:CDY47201.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016829	GO:GO:0046496	GO:GO:0047453	GO:GO:0052855	EnsemblPlantsGene:GSBRNA2T00086908001	InterPro:IPR000631
InterPro:IPR029056	HAMAP:MF_01965	PFAM:PF01256	PFscan:PS51383	PANTHER:PTHR12592	PANTHER:PTHR12592:SF0
InterPro:Ribokinase-like	SUPFAM:SSF53613	TIGRFAMs:TIGR00196	UniParc:UPI0004EDEA64	SEG:seg	:

Description

BnaAnng08710DATP-dependent (S)-NAD(P)H-hydrate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A078IBI9]

Coordinates

chrLK032702:-:126454..128369

Molecular Weight (calculated)

34706.7 Da

IEP (calculated)

5.104

GRAVY (calculated)

0.048

Length

321 amino acids

Sequence
(BLAST)

001: MSSTSEADAE SVLRLVTPSL DLKRHKGQAG KIAVIGGCRE YTGAPYFAAI SALKIGADLS HVFCTKDAAP VIKSYSPELI VHPVLEESYT ISDFSEEERK
101: QVQERVVGEV DKWMERFDCL VIGPGLGRDP FLLECVSEIM LLARKFNVPF LVDGDGLFLV TNSIDLVSSY PLAVLTPNVN EYKRLVQRVL NCEVDEENAE
201: DQLRSLAKQI GGVTILRKGK SDLISNGEIV KSVSIYGSPR RCGGQGDILS GSVAVFLSWS QQLISGHESL SENPAILGCI AASGLLRKAA SLAFTKHKRS
301: TLTSDIIGCL GESLEDICPA S

Best Arabidopsis Sequence Match ( AT5G19150.2 )
(BLAST)

001: MLVKPSIISG LVRLTSHSPS SSSSVLRRQE FLVRTLCGSP IIRAMSSTSE ADAESVLRTV TPSLDLKRHK GQAGKIAVIG GCREYTGAPY FAAISALKIG
101: ADLSHVFCTK DAAPVIKSYS PELIVHPVLE ESYSISQLSE EDKREVQDKV LGEVGKWMER FDCLVIGPGL GRDPFLLECV SIIMLLAKKS NVPFVIDGDG
201: LFLVTNSIDL VHSYPLAVLT PNVNEYKRLV QKVLNCEVDE QNAEDQLRSL AKQIGGVTIL RKGKSDLISN GETVKSVSIY GSPRRCGGQG DILSGGVAVF
301: LSWAQQLKSD PESPSENPAI LGCIAASGLL RKAASLAFTK HKRSTLTSDI IECLGESLED ICPAS

Arabidopsis Description

ATP-dependent (S)-NAD(P)H-hydrate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A178UA58]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.