CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70866
CDX88899
CDY02580
CDY47201
CDY59013
CDY59025
CDY66931

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19150.1	CDX70866	AT5G19150.1	21798944
AT5G19150.1	CDX88899	AT5G19150.1	21798944
AT5G19150.1	CDY02580	AT5G19150.1	21798944
AT5G19150.1	CDY47201	AT5G19150.1	21798944
AT5G19150.1	CDY59013	AT5G19150.1	21798944
AT5G19150.1	CDY59025	AT5G19150.1	21798944
AT5G19150.1	CDY66931	AT5G19150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006496.1-P	Field mustard	plastid	98.65	98.65
CDY59025	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	29.65	97.35
CDX70866	Canola	plastid	92.99	93.75
CDY47201	Canola	cytosol	79.78	92.21
CDY02580	Canola	cytosol	79.25	91.59
CDY66931	Canola	plastid	89.49	90.71
AT5G19150.1	Thale cress	plastid	87.6	89.04
CDY59013	Canola	plastid	82.21	88.92
PGSC0003DMT400023297	Potato	plastid	59.84	73.51
Solyc01g079860.2.1	Tomato	cytosol, extracellular, plastid	62.53	72.05
VIT_05s0020g02800.t01	Wine grape	mitochondrion	68.46	71.75
KRH02108	Soybean	cytosol	67.12	67.66
GSMUA_Achr6P21250_001	Banana	plastid	63.61	63.44
Os11t0276300-01	Rice	mitochondrion	62.53	62.53
KRH51040	Soybean	cytosol	67.12	59.29
KXG28294	Sorghum	plastid	63.34	59.19
Zm00001d049088_P002	Maize	mitochondrion	62.53	56.45
TraesCS4D01G080700.2	Wheat	plastid	57.95	55.84
HORVU4Hr1G014230.4	Barley	mitochondrion	61.99	55.83
TraesCS4B01G082200.1	Wheat	mitochondrion	57.14	55.79
TraesCS4A01G233500.1	Wheat	plastid	57.41	55.32

Protein Annotations

EnsemblPlants:CDX88899	EnsemblPlantsGene:GSBRNA2T00148991001	Gene3D:3.40.1190.20	GO:A0A078DJS2	GO:GO:0003674	GO:GO:0003824
GO:GO:0052855	HAMAP:MF_01965	InterPro:CARKD	InterPro:IPR000631	InterPro:IPR029056	InterPro:Ribokinase-like
PANTHER:PTHR12592	PANTHER:PTHR12592:SF0	PFAM:PF01256	PFscan:PS51383	ProteinID:CDX88899	ProteinID:CDX88899.1
SEG:seg	SUPFAM:SSF53613	TIGRFAMs:TIGR00196	UniParc:UPI0004EE648D	MapMan:35.1	:

Description

BnaA03g07500D

Coordinates

chrLK031856:+:1495525..1497866

Molecular Weight (calculated)

40131.6 Da

IEP (calculated)

8.680

GRAVY (calculated)

-0.032

Length

371 amino acids

Sequence
(BLAST)

001: MLVKHGVISA LTRSTSHSPS SSSSTVLRRQ QFLVRTLCAS KTHLPKLIRA MSSTSEADAE SVLRTVTPSL DPKRHKGQAG KIAVIGGCRE YTGAPYFAAI
101: SALKIGADLS HVFCTKDAAP VIKSYSPELI VHPVLEESYT ISQFSEEEKR KVQDKVIGEV DKWMERFDCL VIGPGLGRDP FLLECVSKIM LLAKKSNVPF
201: VVDGDGLFLV TNSIDLVKSY PLAVLTPNVN EYKRLVQKVL NCEVDEEKAE DQLRSLAKQI GGVTILRKGK SDLISNGEIV KSVSIYGSPR RCGGQGDILS
301: GSVAVFLSWA QQLKSDPESP SESPVILGCI AASGLLRKAA SLAFTKHKRS TLTSDIIECL GKSLEDICPA S

Best Arabidopsis Sequence Match ( AT5G19150.2 )
(BLAST)

001: MLVKPSIISG LVRLTSHSPS SSSSVLRRQE FLVRTLCGSP IIRAMSSTSE ADAESVLRTV TPSLDLKRHK GQAGKIAVIG GCREYTGAPY FAAISALKIG
101: ADLSHVFCTK DAAPVIKSYS PELIVHPVLE ESYSISQLSE EDKREVQDKV LGEVGKWMER FDCLVIGPGL GRDPFLLECV SIIMLLAKKS NVPFVIDGDG
201: LFLVTNSIDL VHSYPLAVLT PNVNEYKRLV QKVLNCEVDE QNAEDQLRSL AKQIGGVTIL RKGKSDLISN GETVKSVSIY GSPRRCGGQG DILSGGVAVF
301: LSWAQQLKSD PESPSENPAI LGCIAASGLL RKAASLAFTK HKRSTLTSDI IECLGESLED ICPAS

Arabidopsis Description

ATP-dependent (S)-NAD(P)H-hydrate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A178UA58]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.