Factsheet for TraesCS4A01G233500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G233500.1
TraesCS4B01G082200.1
TraesCS4D01G080700.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19150.1	TraesCS4A01G233500.1	AT5G19150.1	21798944
AT5G19150.1	TraesCS4B01G082200.1	AT5G19150.1	21798944
AT5G19150.1	TraesCS4D01G080700.2	AT5G19150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G082200.1	Wheat	mitochondrion	95.58	96.84
TraesCS4D01G080700.2	Wheat	plastid	96.62	96.62
HORVU4Hr1G014230.4	Barley	mitochondrion	87.53	81.8
Os11t0276300-01	Rice	mitochondrion	77.66	80.59
KXG28294	Sorghum	plastid	78.7	76.32
Zm00001d049088_P002	Maize	mitochondrion	72.73	68.13
GSMUA_Achr6P21250_001	Banana	plastid	61.82	63.98
CDY47201	Canola	cytosol	52.73	63.24
CDY02580	Canola	cytosol	52.47	62.93
PGSC0003DMT400023297	Potato	plastid	49.35	62.91
Bra023708.1-P	Field mustard	cytosol	51.95	62.31
VIT_05s0020g02800.t01	Wine grape	mitochondrion	57.14	62.15
Solyc01g079860.2.1	Tomato	cytosol, extracellular, plastid	51.69	61.8
AT5G19150.1	Thale cress	plastid	55.84	58.9
KRH02108	Soybean	cytosol	55.58	58.15
CDY59013	Canola	plastid	51.43	57.73
CDX88899	Canola	plastid	55.32	57.41
Bra006496.1-P	Field mustard	plastid	55.32	57.41
CDX70866	Canola	plastid	54.29	56.79
CDY66931	Canola	plastid	53.77	56.56
CDY59025	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	15.58	53.1
KRH51040	Soybean	cytosol	55.58	50.95

Protein Annotations

Gene3D:3.40.1190.20	MapMan:35.1	InterPro:CARKD	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0006139
GO:GO:0006734	GO:GO:0006739	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0047453	GO:GO:0052855	GO:GO:0052856	GO:GO:0052857	InterPro:IPR000631
InterPro:IPR029056	HAMAP:MF_01965	PFAM:PF01256	PFscan:PS51383	PANTHER:PTHR12592	PANTHER:PTHR12592:SF0
InterPro:Ribokinase-like	SUPFAM:SSF53613	TIGRFAMs:TIGR00196	EnsemblPlantsGene:TraesCS4A01G233500	EnsemblPlants:TraesCS4A01G233500.1	TIGR:cd01171
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:-:542476351..542481624

Molecular Weight (calculated)

41810.5 Da

IEP (calculated)

8.612

GRAVY (calculated)

-0.038

Length

385 amino acids

Sequence
(BLAST)

001: MSLSMGACPH AWRHHLHHRG RMWAASPAFR RQLVLLRSLA PTTCAYGGRA SSSSLRPHAM SAAAGPVYEA DAEAVVRRIT PPLDRARHKG QAGKIAIIGG
101: CREYTGAPYF AAISALKVGA DLSHVFCTKD AATVIKSYSP ELIVHPILEE SYSVRDDERE SVSSSILTEV IKWMERFDCI VVGPGLGRDS FLMDCISNIM
201: RHARQANIPT VVDGDGLFLI TNNIGLVEDN SLAILTPNVY EYKRLVQKVL NCEVNEENAS EQLTALCQKI GGVTIMRKGK ADVISDGKKV TQVSTFGSPR
301: RCGGQGDILS GSVAVFSSWA RHFLLSNKQP KETSVNPMVL GCIAGSLLLR KAAALAFEKN KRSTVTTDII EFLGQSLEDI CPAGW

Best Arabidopsis Sequence Match ( AT5G19150.2 )
(BLAST)

001: MLVKPSIISG LVRLTSHSPS SSSSVLRRQE FLVRTLCGSP IIRAMSSTSE ADAESVLRTV TPSLDLKRHK GQAGKIAVIG GCREYTGAPY FAAISALKIG
101: ADLSHVFCTK DAAPVIKSYS PELIVHPVLE ESYSISQLSE EDKREVQDKV LGEVGKWMER FDCLVIGPGL GRDPFLLECV SIIMLLAKKS NVPFVIDGDG
201: LFLVTNSIDL VHSYPLAVLT PNVNEYKRLV QKVLNCEVDE QNAEDQLRSL AKQIGGVTIL RKGKSDLISN GETVKSVSIY GSPRRCGGQG DILSGGVAVF
301: LSWAQQLKSD PESPSENPAI LGCIAASGLL RKAASLAFTK HKRSTLTSDI IECLGESLED ICPAS

Arabidopsis Description

ATP-dependent (S)-NAD(P)H-hydrate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A178UA58]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.