CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG28294

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19150.1	KXG28294	AT5G19150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0276300-01	Rice	mitochondrion	80.6	86.25
Zm00001d049088_P002	Maize	mitochondrion	86.9	83.94
TraesCS4B01G082200.1	Wheat	mitochondrion	75.57	78.95
TraesCS4A01G233500.1	Wheat	plastid	76.32	78.7
TraesCS4D01G080700.2	Wheat	plastid	75.57	77.92
HORVU4Hr1G014230.4	Barley	mitochondrion	75.31	72.57
PGSC0003DMT400023297	Potato	plastid	53.9	70.86
CDY47201	Canola	cytosol	56.17	69.47
CDY02580	Canola	cytosol	56.17	69.47
Solyc01g079860.2.1	Tomato	cytosol, extracellular, plastid	55.92	68.94
Bra023708.1-P	Field mustard	cytosol	55.67	68.85
VIT_05s0020g02800.t01	Wine grape	mitochondrion	60.71	68.08
GSMUA_Achr6P21250_001	Banana	plastid	63.73	68.01
CDY59025	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	19.14	67.26
AT5G19150.1	Thale cress	plastid	59.7	64.93
KRH02108	Soybean	cytosol	59.45	64.13
CDX88899	Canola	plastid	59.19	63.34
Bra006496.1-P	Field mustard	plastid	59.19	63.34
CDX70866	Canola	plastid	57.18	61.68
CDY66931	Canola	plastid	56.42	61.2
CDY59013	Canola	plastid	51.13	59.18
KRH51040	Soybean	cytosol	59.7	56.43

Protein Annotations

Gene3D:3.40.1190.20	MapMan:35.1	UniProt:A0A1B6PRJ3	InterPro:CARKD	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0006139	GO:GO:0006734	GO:GO:0006739
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016829
GO:GO:0046496	GO:GO:0047453	GO:GO:0052855	GO:GO:0052856	GO:GO:0052857	InterPro:IPR000631
InterPro:IPR029056	EnsemblPlants:KXG28294	ProteinID:KXG28294	ProteinID:KXG28294.1	HAMAP:MF_01965	PFAM:PF01256
PFscan:PS51383	PANTHER:PTHR12592	PANTHER:PTHR12592:SF0	InterPro:Ribokinase-like	EnsemblPlantsGene:SORBI_3005G106900	SUPFAM:SSF53613
TIGRFAMs:TIGR00196	UniParc:UPI00081ABD75	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:20072351..20093488

Molecular Weight (calculated)

43057.8 Da

IEP (calculated)

8.427

GRAVY (calculated)

-0.089

Length

397 amino acids

Sequence
(BLAST)

001: MSRPTGACPH AWRHQQQPLR GRMWAASPAF RRQLVLLRSL LPSPPAPSSV AGFPPSCPSC SSFLRVRTNH AMAASAGTVY EADAEAVVRR ITPPLDRARH
101: KGQAGKIAVI GGCREYTGAP YFAAISALKV GADLSHVFCT KDAATVIKSY SPELIVHPIL EESYSVRDDE RASVSSKILT EVGKWMERFD CIVVGPGLGR
201: DSFLLDCVSN IMRHARQANI PTVVDGDGLF LVTNNLSLVE GNPLAILTPN VYEYKRLVQK VLNCDVDEET ASEQLITLCQ KIGDVTIMQK GKADVISDGK
301: TVTQVSTFGS PRRCGGQGDI LSGSVAVFAS WARHFVLTNE QPTEKRVNPM TLGCIAGSLL LRKAASHAFE KNKRSTVTSD IIEFLGKSLE DICPAEH

Best Arabidopsis Sequence Match ( AT5G19150.2 )
(BLAST)

001: MLVKPSIISG LVRLTSHSPS SSSSVLRRQE FLVRTLCGSP IIRAMSSTSE ADAESVLRTV TPSLDLKRHK GQAGKIAVIG GCREYTGAPY FAAISALKIG
101: ADLSHVFCTK DAAPVIKSYS PELIVHPVLE ESYSISQLSE EDKREVQDKV LGEVGKWMER FDCLVIGPGL GRDPFLLECV SIIMLLAKKS NVPFVIDGDG
201: LFLVTNSIDL VHSYPLAVLT PNVNEYKRLV QKVLNCEVDE QNAEDQLRSL AKQIGGVTIL RKGKSDLISN GETVKSVSIY GSPRRCGGQG DILSGGVAVF
301: LSWAQQLKSD PESPSENPAI LGCIAASGLL RKAASLAFTK HKRSTLTSDI IECLGESLED ICPAS

Arabidopsis Description

ATP-dependent (S)-NAD(P)H-hydrate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A178UA58]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.