Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 4
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
TraesCS4A01G233500.1 | |
TraesCS4B01G082200.1 | |
TraesCS4D01G080700.2 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G19150.1 | TraesCS4A01G233500.1 | AT5G19150.1 | 21798944 |
AT5G19150.1 | TraesCS4B01G082200.1 | AT5G19150.1 | 21798944 |
AT5G19150.1 | TraesCS4D01G080700.2 | AT5G19150.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS4D01G080700.2 | Wheat | plastid | 96.84 | 95.58 |
TraesCS4A01G233500.1 | Wheat | plastid | 96.84 | 95.58 |
HORVU4Hr1G014230.4 | Barley | mitochondrion | 88.42 | 81.55 |
Os11t0276300-01 | Rice | mitochondrion | 78.42 | 80.32 |
KXG28294 | Sorghum | plastid | 78.95 | 75.57 |
Zm00001d049088_P002 | Maize | mitochondrion | 72.89 | 67.4 |
GSMUA_Achr6P21250_001 | Banana | plastid | 62.63 | 63.98 |
CDY47201 | Canola | cytosol | 53.16 | 62.93 |
CDY02580 | Canola | cytosol | 52.89 | 62.62 |
VIT_05s0020g02800.t01 | Wine grape | mitochondrion | 58.16 | 62.43 |
Bra023708.1-P | Field mustard | cytosol | 52.63 | 62.31 |
PGSC0003DMT400023297 | Potato | plastid | 49.47 | 62.25 |
Solyc01g079860.2.1 | Tomato | cytosol, extracellular, plastid | 52.37 | 61.8 |
KRH02108 | Soybean | cytosol | 56.84 | 58.7 |
AT5G19150.1 | Thale cress | plastid | 56.32 | 58.63 |
CDY59013 | Canola | plastid | 51.58 | 57.14 |
CDX88899 | Canola | plastid | 55.79 | 57.14 |
Bra006496.1-P | Field mustard | plastid | 55.79 | 57.14 |
CDX70866 | Canola | plastid | 54.47 | 56.25 |
CDY66931 | Canola | plastid | 53.95 | 56.01 |
CDY59025 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 15.26 | 51.33 |
KRH51040 | Soybean | cytosol | 56.32 | 50.95 |
Protein Annotations
Gene3D:3.40.1190.20 | MapMan:35.1 | InterPro:CARKD | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005829 | GO:GO:0006139 |
GO:GO:0006734 | GO:GO:0006739 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009536 |
GO:GO:0009987 | GO:GO:0047453 | GO:GO:0052855 | GO:GO:0052856 | GO:GO:0052857 | InterPro:IPR000631 |
InterPro:IPR029056 | HAMAP:MF_01965 | PFAM:PF01256 | PFscan:PS51383 | PANTHER:PTHR12592 | PANTHER:PTHR12592:SF0 |
InterPro:Ribokinase-like | SUPFAM:SSF53613 | TIGRFAMs:TIGR00196 | EnsemblPlantsGene:TraesCS4B01G082200 | EnsemblPlants:TraesCS4B01G082200.1 | TIGR:cd01171 |
SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:80985943..80991418
Molecular Weight (calculated)
41167.6 Da
IEP (calculated)
8.213
GRAVY (calculated)
-0.043
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MGACPHAWQH QLQHRGRMWA ASPAFRRQLF LLRSLAPTCA DGGRASSSSL RPHAMSAAAG PVYEADAEAV VRRITPPLDR ARHKGQAGKI AIIGGCREYT
101: GAPYFAAISA LKVGADLSHV FCTKDAATVI KSYSPELIVH PILEESYSVR DDERESVSSS ILTEVIKWVE RFDCIVVGPG LGRDSFLMDC VSNIMRHARQ
201: ANIPIVVDGD GLFLITNNIG LVEDNSLAIL TPNVYEYKRL VQKILNCEVN EENASEQLTA LCQKIGGVTI MKKGKADVIS DGKKVTQVST FGSPRRCGGQ
301: GDILSGSVAV FSSWARHFLL SNEQPKETSV NPMVLGCIAG SLLLRKAAAL AFEKNKRSTV TTDIIEFLGQ SLEDICPAGR
101: GAPYFAAISA LKVGADLSHV FCTKDAATVI KSYSPELIVH PILEESYSVR DDERESVSSS ILTEVIKWVE RFDCIVVGPG LGRDSFLMDC VSNIMRHARQ
201: ANIPIVVDGD GLFLITNNIG LVEDNSLAIL TPNVYEYKRL VQKILNCEVN EENASEQLTA LCQKIGGVTI MKKGKADVIS DGKKVTQVST FGSPRRCGGQ
301: GDILSGSVAV FSSWARHFLL SNEQPKETSV NPMVLGCIAG SLLLRKAAAL AFEKNKRSTV TTDIIEFLGQ SLEDICPAGR
001: MLVKPSIISG LVRLTSHSPS SSSSVLRRQE FLVRTLCGSP IIRAMSSTSE ADAESVLRTV TPSLDLKRHK GQAGKIAVIG GCREYTGAPY FAAISALKIG
101: ADLSHVFCTK DAAPVIKSYS PELIVHPVLE ESYSISQLSE EDKREVQDKV LGEVGKWMER FDCLVIGPGL GRDPFLLECV SIIMLLAKKS NVPFVIDGDG
201: LFLVTNSIDL VHSYPLAVLT PNVNEYKRLV QKVLNCEVDE QNAEDQLRSL AKQIGGVTIL RKGKSDLISN GETVKSVSIY GSPRRCGGQG DILSGGVAVF
301: LSWAQQLKSD PESPSENPAI LGCIAASGLL RKAASLAFTK HKRSTLTSDI IECLGESLED ICPAS
101: ADLSHVFCTK DAAPVIKSYS PELIVHPVLE ESYSISQLSE EDKREVQDKV LGEVGKWMER FDCLVIGPGL GRDPFLLECV SIIMLLAKKS NVPFVIDGDG
201: LFLVTNSIDL VHSYPLAVLT PNVNEYKRLV QKVLNCEVDE QNAEDQLRSL AKQIGGVTIL RKGKSDLISN GETVKSVSIY GSPRRCGGQG DILSGGVAVF
301: LSWAQQLKSD PESPSENPAI LGCIAASGLL RKAASLAFTK HKRSTLTSDI IECLGESLED ICPAS
Arabidopsis Description
ATP-dependent (S)-NAD(P)H-hydrate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A178UA58]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.