CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70866
CDX88899
CDY02580
CDY47201
CDY59013
CDY59025
CDY66931

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19150.1	CDX70866	AT5G19150.1	21798944
AT5G19150.1	CDX88899	AT5G19150.1	21798944
AT5G19150.1	CDY02580	AT5G19150.1	21798944
AT5G19150.1	CDY47201	AT5G19150.1	21798944
AT5G19150.1	CDY59013	AT5G19150.1	21798944
AT5G19150.1	CDY59025	AT5G19150.1	21798944
AT5G19150.1	CDY66931	AT5G19150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47201	Canola	cytosol	93.81	33.02
CDY02580	Canola	cytosol	92.92	32.71
CDX88899	Canola	plastid	97.35	29.65
CDY66931	Canola	plastid	93.81	28.96
AT5G19150.1	Thale cress	plastid	92.92	28.77
CDX70866	Canola	plastid	92.92	28.53
PGSC0003DMT400023297	Potato	plastid	73.45	27.48
CDY59013	Canola	plastid	83.19	27.41
Solyc01g079860.2.1	Tomato	cytosol, extracellular, plastid	73.45	25.78
VIT_05s0020g02800.t01	Wine grape	mitochondrion	78.76	25.14
KRH02108	Soybean	cytosol	72.57	22.28
GSMUA_Achr6P21250_001	Banana	plastid	67.26	20.43
Os11t0276300-01	Rice	mitochondrion	66.37	20.22
KRH51040	Soybean	cytosol	73.45	19.76
KXG28294	Sorghum	plastid	67.26	19.14
HORVU4Hr1G014230.4	Barley	mitochondrion	69.03	18.93
Zm00001d049088_P002	Maize	mitochondrion	66.37	18.25
TraesCS4D01G080700.2	Wheat	plastid	53.98	15.84
TraesCS4A01G233500.1	Wheat	plastid	53.1	15.58
TraesCS4B01G082200.1	Wheat	mitochondrion	51.33	15.26

Protein Annotations

EnsemblPlants:CDY59025	EnsemblPlantsGene:GSBRNA2T00025459001	Gene3D:3.40.1190.20	GO:A0A078J7B3	GO:GO:0003674	GO:GO:0003824
GO:GO:0052855	InterPro:CARKD	InterPro:IPR000631	InterPro:IPR029056	InterPro:Ribokinase-like	PANTHER:PTHR12592
PANTHER:PTHR12592:SF0	PFAM:PF01256	PFscan:PS51383	ProteinID:CDY59025	ProteinID:CDY59025.1	SUPFAM:SSF53613
UniParc:UPI0004EF4A0A	UniProt:A0A078J7B3	MapMan:35.1	:	:	:

Description

BnaCnng34130DBnaCnng34130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J7B3]

Coordinates

chrLK033718:-:39648..40682

Molecular Weight (calculated)

12350.1 Da

IEP (calculated)

9.178

GRAVY (calculated)

-0.076

Length

113 amino acids

Sequence
(BLAST)

001: MLLAKKFNVP FVVDGDGLFL VTNSIDLVKS YPLAVLTPNV NEYKRLVQKV LNCEVDEEKA EDQLRSLAKQ IGGVTILRKG KTDLISNGEI VKSVSIYGSP
101: RRCGGQGDIL SGR

Best Arabidopsis Sequence Match ( AT5G19150.1 )
(BLAST)

001: MLVKPSIISG LVRLTSHSPS SSSSVLRRQE FLVRTLCGSP IIRAMSSTSE ADAESVLRTV TPSLDLKRHK GQAGKIAVIG GCREYTGAPY FAAISALKIG
101: ADLSHVFCTK DAAPVIKSYS PELIVHPVLE ESYSISQLSE EDKREVQDKV LGEVGKWMER FDCLVIGPGL GRDPFLLECV SIIMLLAKKS NVPFVIDGDG
201: LFLVTNSIDL VHSYPLAVLT PNVNEYKRLV QKVLNCEVDE QNAEDQLRSL AKQIGGVTIL RKGKSDLISN GETVKSVSIY GSPRRCGGQG DILSGGVAVF
301: LSWAQQLKSD PESPSENPAI LGCIAASGLL RKAASLAFTK HKRSTLTSDI IECLGESLED ICPAS

Arabidopsis Description

ATP-dependent (S)-NAD(P)H-hydrate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A178UA58]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.