Factsheet for Solyc01g079860.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

nucleus 1
cytosol 1
plastid 3
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g079860.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19150.1	Solyc01g079860.2.1	AT5G19150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023297	Potato	plastid	87.89	93.71
CDY59025	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	25.78	73.45
Bra023708.1-P	Field mustard	cytosol	72.36	72.59
CDY02580	Canola	cytosol	71.12	71.34
CDY47201	Canola	cytosol	70.81	71.03
VIT_05s0020g02800.t01	Wine grape	mitochondrion	77.33	70.34
KRH02108	Soybean	cytosol	75.16	65.76
AT5G19150.1	Thale cress	plastid	72.36	63.84
CDX88899	Canola	plastid	72.05	62.53
Bra006496.1-P	Field mustard	plastid	71.74	62.26
CDX70866	Canola	plastid	70.5	61.68
GSMUA_Achr6P21250_001	Banana	plastid	69.88	60.48
Os11t0276300-01	Rice	mitochondrion	69.25	60.11
CDY66931	Canola	plastid	67.7	59.56
KRH51040	Soybean	cytosol	76.4	58.57
CDY59013	Canola	plastid	61.18	57.43
KXG28294	Sorghum	plastid	68.94	55.92
Zm00001d049088_P002	Maize	mitochondrion	68.32	53.53
HORVU4Hr1G014230.4	Barley	mitochondrion	67.7	52.91
TraesCS4B01G082200.1	Wheat	mitochondrion	61.8	52.37
TraesCS4D01G080700.2	Wheat	plastid	62.11	51.95
TraesCS4A01G233500.1	Wheat	plastid	61.8	51.69

Protein Annotations

Gene3D:3.40.1190.20	MapMan:35.1	InterPro:CARKD	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005829	GO:GO:0006139	GO:GO:0006734	GO:GO:0006739	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016829	GO:GO:0046496
GO:GO:0047453	GO:GO:0052855	GO:GO:0052856	GO:GO:0052857	InterPro:IPR000631	InterPro:IPR029056
UniProt:K4AXN1	HAMAP:MF_01965	PFAM:PF01256	PFscan:PS51383	PANTHER:PTHR12592	PANTHER:PTHR12592:SF0
InterPro:Ribokinase-like	SUPFAM:SSF53613	EnsemblPlantsGene:Solyc01g079860.2	EnsemblPlants:Solyc01g079860.2.1	TIGRFAMs:TIGR00196	UniParc:UPI0002761F42

Description

ATP-dependent (S)-NAD(P)H-hydrate dehydratase [Source:UniProtKB/TrEMBL;Acc:K4AXN1]

Coordinates

chr1:+:78992440..79002500

Molecular Weight (calculated)

34251.5 Da

IEP (calculated)

6.495

GRAVY (calculated)

0.119

Length

322 amino acids

Sequence
(BLAST)

001: MQSVMSSGPS LEADSVSILR SIIPGLESTK HKGQAGKIAV VGGCREYTGA PYFSAISALK IGADLSHVFC TKDAAPVIKS YSPELIVHPI LEESYSIRDE
101: EKSSISAKVI AEVEKWIERF DCLVVGPGLG RDPFLLDCVS NIMKHARERN VPMVIDGDGL YLVTNCLDLV SGYPLAVLTP NVNEYKRLVQ KVLNSEVNDE
201: NGTDQLLSLA KGIGGVTILR KGKSDFVSDG KTACAVSIYG SPRRCGGQGD ILSGSVAVFL SWACQCAAKG EVSMNPTMLG CVAGSALLRK AASMAFDNKK
301: RSTLTGDIIE CLGISLQEIC PV

Best Arabidopsis Sequence Match ( AT5G19150.2 )
(BLAST)

001: MLVKPSIISG LVRLTSHSPS SSSSVLRRQE FLVRTLCGSP IIRAMSSTSE ADAESVLRTV TPSLDLKRHK GQAGKIAVIG GCREYTGAPY FAAISALKIG
101: ADLSHVFCTK DAAPVIKSYS PELIVHPVLE ESYSISQLSE EDKREVQDKV LGEVGKWMER FDCLVIGPGL GRDPFLLECV SIIMLLAKKS NVPFVIDGDG
201: LFLVTNSIDL VHSYPLAVLT PNVNEYKRLV QKVLNCEVDE QNAEDQLRSL AKQIGGVTIL RKGKSDLISN GETVKSVSIY GSPRRCGGQG DILSGGVAVF
301: LSWAQQLKSD PESPSENPAI LGCIAASGLL RKAASLAFTK HKRSTLTSDI IECLGESLED ICPAS

Arabidopsis Description

ATP-dependent (S)-NAD(P)H-hydrate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A178UA58]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.