CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70866
CDX88899
CDY02580
CDY47201
CDY59013
CDY59025
CDY66931

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19150.1	CDX70866	AT5G19150.1	21798944
AT5G19150.1	CDX88899	AT5G19150.1	21798944
AT5G19150.1	CDY02580	AT5G19150.1	21798944
AT5G19150.1	CDY47201	AT5G19150.1	21798944
AT5G19150.1	CDY59013	AT5G19150.1	21798944
AT5G19150.1	CDY59025	AT5G19150.1	21798944
AT5G19150.1	CDY66931	AT5G19150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59025	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	27.41	83.19
CDX88899	Canola	plastid	88.92	82.21
CDY02580	Canola	cytosol	75.51	80.69
CDY47201	Canola	cytosol	75.51	80.69
CDX70866	Canola	plastid	85.13	79.35
CDY66931	Canola	plastid	83.97	78.69
AT5G19150.1	Thale cress	plastid	83.09	78.08
PGSC0003DMT400023297	Potato	plastid	54.81	62.25
VIT_05s0020g02800.t01	Wine grape	mitochondrion	63.56	61.58
Solyc01g079860.2.1	Tomato	cytosol, extracellular, plastid	57.43	61.18
KRH02108	Soybean	cytosol	63.27	58.97
GSMUA_Achr6P21250_001	Banana	plastid	59.48	54.84
Os11t0276300-01	Rice	mitochondrion	58.89	54.45
TraesCS4D01G080700.2	Wheat	plastid	58.6	52.21
KRH51040	Soybean	cytosol	63.85	52.14
TraesCS4B01G082200.1	Wheat	mitochondrion	57.14	51.58
TraesCS4A01G233500.1	Wheat	plastid	57.73	51.43
KXG28294	Sorghum	plastid	59.18	51.13
HORVU4Hr1G014230.4	Barley	mitochondrion	58.31	48.54
Zm00001d049088_P002	Maize	mitochondrion	58.02	48.42

Protein Annotations

Gene3D:3.40.1190.20	MapMan:35.1	GO:A0A078J0Y4	UniProt:A0A078J0Y4	InterPro:CARKD	EnsemblPlants:CDY59013
ProteinID:CDY59013	ProteinID:CDY59013.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016829
GO:GO:0046496	GO:GO:0047453	GO:GO:0052855	EnsemblPlantsGene:GSBRNA2T00025449001	InterPro:IPR000631	InterPro:IPR029056
HAMAP:MF_01965	PFAM:PF01256	PFscan:PS51383	PANTHER:PTHR12592	PANTHER:PTHR12592:SF0	InterPro:Ribokinase-like
SUPFAM:SSF53613	UniParc:UPI0004EF1157	SEG:seg	:	:	:

Description

BnaCnng34040DATP-dependent (S)-NAD(P)H-hydrate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A078J0Y4]

Coordinates

chrLK033718:-:8873..10900

Molecular Weight (calculated)

37371.5 Da

IEP (calculated)

7.658

GRAVY (calculated)

0.103

Length

343 amino acids

Sequence
(BLAST)

001: MLLRHGVISA FEQLTSHSLS SSSSSTVIRR QQFLVRTLCA SRTHLIRAMS STSEADAESV LRTVTPSLDP KRHKGQAGKI AVIGGCPVLI CLMYVVFCTE
101: DAAPVIKSYS PELIVHPVLE ESYNISQFTE EEKRKVQDKV IGEVDKWMER FDCLVIGPGL GRDPFLLECV SKIMLLAKKF NVPFVVDGDG LFLVTNSIDL
201: VKSYPLAVLT PNVNEYKRLV QKVLSCEVDE ENAGDQLRAL AKQIGGVTIL RKGKSDLISN GEMVKSVSIY GSPSVAVFLS WARQLKSGLE SPSENPAILG
301: CIAASGLLRK AAALAFTKHK RSTLTSDIIE CLGESLEDIC PAS

Best Arabidopsis Sequence Match ( AT5G19150.1 )
(BLAST)

001: MLVKPSIISG LVRLTSHSPS SSSSVLRRQE FLVRTLCGSP IIRAMSSTSE ADAESVLRTV TPSLDLKRHK GQAGKIAVIG GCREYTGAPY FAAISALKIG
101: ADLSHVFCTK DAAPVIKSYS PELIVHPVLE ESYSISQLSE EDKREVQDKV LGEVGKWMER FDCLVIGPGL GRDPFLLECV SIIMLLAKKS NVPFVIDGDG
201: LFLVTNSIDL VHSYPLAVLT PNVNEYKRLV QKVLNCEVDE QNAEDQLRSL AKQIGGVTIL RKGKSDLISN GETVKSVSIY GSPRRCGGQG DILSGGVAVF
301: LSWAQQLKSD PESPSENPAI LGCIAASGLL RKAASLAFTK HKRSTLTSDI IECLGESLED ICPAS

Arabidopsis Description

ATP-dependent (S)-NAD(P)H-hydrate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A178UA58]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.