Factsheet for GSMUA_Achr6P21250_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P21250_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19150.1	GSMUA_Achr6P21250_001	AT5G19150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0020g02800.t01	Wine grape	mitochondrion	68.82	72.32
PGSC0003DMT400023297	Potato	plastid	58.06	71.52
Solyc01g079860.2.1	Tomato	cytosol, extracellular, plastid	60.48	69.88
CDY02580	Canola	cytosol	59.41	68.85
CDY47201	Canola	cytosol	59.41	68.85
Os11t0276300-01	Rice	mitochondrion	68.28	68.46
Bra023708.1-P	Field mustard	cytosol	58.87	68.22
CDY59025	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	20.43	67.26
KRH02108	Soybean	cytosol	66.4	67.12
AT5G19150.1	Thale cress	plastid	64.25	65.48
KXG28294	Sorghum	plastid	68.01	63.73
Bra006496.1-P	Field mustard	plastid	63.44	63.61
CDX88899	Canola	plastid	63.44	63.61
TraesCS4B01G082200.1	Wheat	mitochondrion	63.98	62.63
CDX70866	Canola	plastid	61.56	62.23
TraesCS4A01G233500.1	Wheat	plastid	63.98	61.82
TraesCS4D01G080700.2	Wheat	plastid	63.71	61.56
CDY66931	Canola	plastid	60.48	61.48
HORVU4Hr1G014230.4	Barley	mitochondrion	67.2	60.68
KRH51040	Soybean	cytosol	67.47	59.76
CDY59013	Canola	plastid	54.84	59.48
Zm00001d049088_P002	Maize	mitochondrion	65.59	59.37

Protein Annotations

Gene3D:3.40.1190.20	MapMan:35.1	InterPro:CARKD	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005829	GO:GO:0006139	GO:GO:0006734	GO:GO:0006739	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016829	GO:GO:0046496
GO:GO:0047453	GO:GO:0052855	GO:GO:0052856	GO:GO:0052857	EnsemblPlantsGene:GSMUA_Achr6G21250_001	EnsemblPlants:GSMUA_Achr6P21250_001
EnsemblPlants:GSMUA_Achr6T21250_001	InterPro:IPR000631	InterPro:IPR029056	UniProt:M0T8X3	HAMAP:MF_01965	PFAM:PF01256
PFscan:PS51383	PANTHER:PTHR12592	PANTHER:PTHR12592:SF0	InterPro:Ribokinase-like	SUPFAM:SSF53613	TIGRFAMs:TIGR00196
UniParc:UPI000296BA36	SEG:seg	:	:	:	:

Description

Putative Carbohydrate kinase domain-containing protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G21250_001]

Coordinates

chr6:+:16994099..16999083

Molecular Weight (calculated)

40222.4 Da

IEP (calculated)

7.820

GRAVY (calculated)

-0.023

Length

372 amino acids

Sequence
(BLAST)

001: MSGSIASSGC PEYCMWASSA VVRRQLFLIR SLGGYCCRIH SHRMRGIQGA NVEASEADAE SIIRRVTPAL DPIRYKGQAG KIAVIGGCRE YTGAPYFAAI
101: SALKLGADLS HVFCTKDAAT VIKSYSPELI VHPVLEESYS VRDDERDSVS AKVLSEVGKW MERFDCIVVG PGLGRDQFLM GCVSDIMRHA RQSSIPIVID
201: GDGLFLVTNN LDLVRGNPLA VLTPNINEYK RLVEKALDCE VNDEDGTNQL QLLARRIDGV TILRKGKSDF ISDGEAVTSV STFGSPRRCG GQGDILSGSV
301: AVFSSWARRH LLSTKEATGK SLSNPMVLGC IAGSALLRRA AALAFQNKKR ATLTTDIIEY LGKSLEDICP AE

Best Arabidopsis Sequence Match ( AT5G19150.2 )
(BLAST)

001: MLVKPSIISG LVRLTSHSPS SSSSVLRRQE FLVRTLCGSP IIRAMSSTSE ADAESVLRTV TPSLDLKRHK GQAGKIAVIG GCREYTGAPY FAAISALKIG
101: ADLSHVFCTK DAAPVIKSYS PELIVHPVLE ESYSISQLSE EDKREVQDKV LGEVGKWMER FDCLVIGPGL GRDPFLLECV SIIMLLAKKS NVPFVIDGDG
201: LFLVTNSIDL VHSYPLAVLT PNVNEYKRLV QKVLNCEVDE QNAEDQLRSL AKQIGGVTIL RKGKSDLISN GETVKSVSIY GSPRRCGGQG DILSGGVAVF
301: LSWAQQLKSD PESPSENPAI LGCIAASGLL RKAASLAFTK HKRSTLTSDI IECLGESLED ICPAS

Arabidopsis Description

ATP-dependent (S)-NAD(P)H-hydrate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A178UA58]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.