Factsheet for Bra006496.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006496.1-P
Bra023708.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19150.1	Bra006496.1-P	AT5G19150.1	21798944
AT5G19150.1	Bra023708.1-P	AT5G19150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88899	Canola	plastid	98.65	98.65
Bra023708.1-P	Field mustard	cytosol	79.78	92.21
AT5G19150.1	Thale cress	plastid	87.33	88.77
PGSC0003DMT400023297	Potato	plastid	59.57	73.18
Solyc01g079860.2.1	Tomato	cytosol, extracellular, plastid	62.26	71.74
VIT_05s0020g02800.t01	Wine grape	mitochondrion	67.92	71.19
KRH02108	Soybean	cytosol	66.58	67.12
GSMUA_Achr6P21250_001	Banana	plastid	63.61	63.44
Os11t0276300-01	Rice	mitochondrion	62.26	62.26
KXG28294	Sorghum	plastid	63.34	59.19
KRH51040	Soybean	cytosol	66.58	58.81
Zm00001d049088_P002	Maize	mitochondrion	62.53	56.45
TraesCS4D01G080700.2	Wheat	plastid	57.95	55.84
HORVU4Hr1G014230.4	Barley	mitochondrion	61.99	55.83
TraesCS4B01G082200.1	Wheat	mitochondrion	57.14	55.79
TraesCS4A01G233500.1	Wheat	plastid	57.41	55.32

Protein Annotations

Gene3D:3.40.1190.20	MapMan:35.1	EnsemblPlantsGene:Bra006496	EnsemblPlants:Bra006496.1	EnsemblPlants:Bra006496.1-P	InterPro:CARKD
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0046496	GO:GO:0047453
GO:GO:0052855	InterPro:IPR000631	InterPro:IPR029056	UniProt:M4CQK7	HAMAP:MF_01965	PFAM:PF01256
PFscan:PS51383	PANTHER:PTHR12592	PANTHER:PTHR12592:SF0	InterPro:Ribokinase-like	SUPFAM:SSF53613	TIGRFAMs:TIGR00196
UniParc:UPI000253FF44	SEG:seg	:	:	:	:

Description

AT5G19150 (E=2e-179) | carbohydrate kinase family

Coordinates

chrA03:-:3790420..3792533

Molecular Weight (calculated)

40078.5 Da

IEP (calculated)

8.543

GRAVY (calculated)

-0.044

Length

371 amino acids

Sequence
(BLAST)

001: MLVKHGVISA LTRSTSHSPS SSSSTVLRRQ QFLVRTLCAS KTHLPKLIRA MSSTSEADAE SVLRTVTPSL DPKRHKGQAG KIAVIGGCRE YTGAPYFAAI
101: SALKIGADLS HVFCTKDAAP VIKSYSPELI VHPVLEESYT ISQFSEDEKR KVQDKVIGEV DKWMERFDCL VIGPGLGRDP FLLECVSKIM LLAKKSNVPF
201: VVDGDGLFLV TNSIDLVKSY PLAVLTPNVN EYKRLVQKVL NCEVDEEKAE DQLRSLAKQI GGVTILRKGK SDLISDGEIV KSVSIYGSPR RCGGQGDILS
301: GGVAVFLSWA QQLKSDPESP SESPAILGCM AASGLLRKAA SLAFTKHKRS TLTSDIIECL GKSLEDICPA S

Best Arabidopsis Sequence Match ( AT5G19150.2 )
(BLAST)

001: MLVKPSIISG LVRLTSHSPS SSSSVLRRQE FLVRTLCGSP IIRAMSSTSE ADAESVLRTV TPSLDLKRHK GQAGKIAVIG GCREYTGAPY FAAISALKIG
101: ADLSHVFCTK DAAPVIKSYS PELIVHPVLE ESYSISQLSE EDKREVQDKV LGEVGKWMER FDCLVIGPGL GRDPFLLECV SIIMLLAKKS NVPFVIDGDG
201: LFLVTNSIDL VHSYPLAVLT PNVNEYKRLV QKVLNCEVDE QNAEDQLRSL AKQIGGVTIL RKGKSDLISN GETVKSVSIY GSPRRCGGQG DILSGGVAVF
301: LSWAQQLKSD PESPSENPAI LGCIAASGLL RKAASLAFTK HKRSTLTSDI IECLGESLED ICPAS

Arabidopsis Description

ATP-dependent (S)-NAD(P)H-hydrate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A178UA58]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.