Factsheet for Zm00001d049088_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d049088_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19150.1	Zm00001d049088_P002	AT5G19150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG28294	Sorghum	plastid	83.94	86.9
Os11t0276300-01	Rice	mitochondrion	73.72	81.67
TraesCS4B01G082200.1	Wheat	mitochondrion	67.4	72.89
TraesCS4A01G233500.1	Wheat	plastid	68.13	72.73
TraesCS4D01G080700.2	Wheat	plastid	67.4	71.95
HORVU4Hr1G014230.4	Barley	mitochondrion	70.32	70.15
CDY02580	Canola	cytosol	54.74	70.09
CDY47201	Canola	cytosol	54.74	70.09
PGSC0003DMT400023297	Potato	plastid	51.09	69.54
Bra023708.1-P	Field mustard	cytosol	54.26	69.47
Solyc01g079860.2.1	Tomato	cytosol, extracellular, plastid	53.53	68.32
CDY59025	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	18.25	66.37
GSMUA_Achr6P21250_001	Banana	plastid	59.37	65.59
VIT_05s0020g02800.t01	Wine grape	mitochondrion	56.45	65.54
AT5G19150.1	Thale cress	plastid	56.69	63.84
CDX88899	Canola	plastid	56.45	62.53
Bra006496.1-P	Field mustard	plastid	56.45	62.53
KRH02108	Soybean	cytosol	55.96	62.5
CDX70866	Canola	plastid	54.26	60.6
CDY66931	Canola	plastid	53.53	60.11
CDY59013	Canola	plastid	48.42	58.02
KRH51040	Soybean	cytosol	55.96	54.76

Protein Annotations

EntrezGene:100216749	Gene3D:3.40.1190.20	MapMan:35.1	UniProt:A0A1D6PS83	ProteinID:AQK49566.1	InterPro:CARKD
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0006139
GO:GO:0006734	GO:GO:0006739	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016829	GO:GO:0046496	GO:GO:0047453	GO:GO:0052855	GO:GO:0052856
GO:GO:0052857	InterPro:IPR000631	InterPro:IPR029056	HAMAP:MF_01965	PFAM:PF01256	PFscan:PS51383
PANTHER:PTHR12592	PANTHER:PTHR12592:SF0	InterPro:Ribokinase-like	SUPFAM:SSF53613	TIGRFAMs:TIGR00196	UniParc:UPI0008430B54
EnsemblPlantsGene:Zm00001d049088	EnsemblPlants:Zm00001d049088_P002	EnsemblPlants:Zm00001d049088_T002	SEG:seg	:	:

Description

ATP-dependent (S)-NAD(P)H-hydrate dehydratase

Coordinates

chr4:-:15686704..15691271

Molecular Weight (calculated)

44546.1 Da

IEP (calculated)

8.483

GRAVY (calculated)

0.071

Length

411 amino acids

Sequence
(BLAST)

001: MSRPTGAWRL GMATCTIPAA PRAHVGRLPG IRQAARPALL LPSFSSSTLL CHRLPPILPL VLQLLRVRAN HAMAASAGTV YEADAEAVVR RITPALDRAR
101: HKGQAGKIAV IGGCREYTGA PYFAAISALK VGADLSHVFC TKDAATVIKS YSPELIVHPI LEESYSVRVD ERASVSSKIL TEVAKWMERF DCIVVGPGLG
201: RDPFLLECVS NIMRHARQAN IPTVVDGDGL FLVNNNLNLV EGNPLAILTP NVYEYKRLVQ KVLNCDVDEE SASEQLIALC QKIGDVTIMQ KGKADVISDG
301: KTANTYVVFM FLKSEVTQVS TFGSPRRCGG QGDILSGSVA VFASWARHFV LTNEEPTEKR VNPMTLGCIA ASLLLRKAAS HAFEKNKRST VTSDIIEFLG
401: KSLEDICPAE H

Best Arabidopsis Sequence Match ( AT5G19150.2 )
(BLAST)

001: MLVKPSIISG LVRLTSHSPS SSSSVLRRQE FLVRTLCGSP IIRAMSSTSE ADAESVLRTV TPSLDLKRHK GQAGKIAVIG GCREYTGAPY FAAISALKIG
101: ADLSHVFCTK DAAPVIKSYS PELIVHPVLE ESYSISQLSE EDKREVQDKV LGEVGKWMER FDCLVIGPGL GRDPFLLECV SIIMLLAKKS NVPFVIDGDG
201: LFLVTNSIDL VHSYPLAVLT PNVNEYKRLV QKVLNCEVDE QNAEDQLRSL AKQIGGVTIL RKGKSDLISN GETVKSVSIY GSPRRCGGQG DILSGGVAVF
301: LSWAQQLKSD PESPSENPAI LGCIAASGLL RKAASLAFTK HKRSTLTSDI IECLGESLED ICPAS

Arabidopsis Description

ATP-dependent (S)-NAD(P)H-hydrate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A178UA58]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.