CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70866
CDX88899
CDY02580
CDY47201
CDY59013
CDY59025
CDY66931

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19150.1	CDX70866	AT5G19150.1	21798944
AT5G19150.1	CDX88899	AT5G19150.1	21798944
AT5G19150.1	CDY02580	AT5G19150.1	21798944
AT5G19150.1	CDY47201	AT5G19150.1	21798944
AT5G19150.1	CDY59013	AT5G19150.1	21798944
AT5G19150.1	CDY59025	AT5G19150.1	21798944
AT5G19150.1	CDY66931	AT5G19150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88899	Canola	plastid	93.75	92.99
CDY59025	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	28.53	92.92
CDY66931	Canola	plastid	91.3	91.8
CDY47201	Canola	cytosol	77.45	88.78
CDY02580	Canola	cytosol	77.17	88.47
AT5G19150.1	Thale cress	plastid	84.78	85.48
CDY59013	Canola	plastid	79.35	85.13
PGSC0003DMT400023297	Potato	plastid	58.97	71.85
Solyc01g079860.2.1	Tomato	cytosol, extracellular, plastid	61.68	70.5
VIT_05s0020g02800.t01	Wine grape	mitochondrion	67.12	69.77
KRH02108	Soybean	cytosol	66.3	66.3
GSMUA_Achr6P21250_001	Banana	plastid	62.23	61.56
Os11t0276300-01	Rice	mitochondrion	60.87	60.38
KRH51040	Soybean	cytosol	66.03	57.86
KXG28294	Sorghum	plastid	61.68	57.18
TraesCS4D01G080700.2	Wheat	plastid	57.07	54.55
TraesCS4B01G082200.1	Wheat	mitochondrion	56.25	54.47
TraesCS4A01G233500.1	Wheat	plastid	56.79	54.29
Zm00001d049088_P002	Maize	mitochondrion	60.6	54.26
HORVU4Hr1G014230.4	Barley	mitochondrion	60.6	54.13

Protein Annotations

EnsemblPlants:CDX70866	EnsemblPlantsGene:GSBRNA2T00140764001	Gene3D:3.40.1190.20	GO:A0A078C1I2	GO:GO:0003674	GO:GO:0003824
GO:GO:0052855	HAMAP:MF_01965	InterPro:CARKD	InterPro:IPR000631	InterPro:IPR029056	InterPro:Ribokinase-like
PANTHER:PTHR12592	PANTHER:PTHR12592:SF0	PFAM:PF01256	PFscan:PS51383	ProteinID:CDX70866	ProteinID:CDX70866.1
SEG:seg	SUPFAM:SSF53613	TIGRFAMs:TIGR00196	UniParc:UPI0004EE15D4	MapMan:35.1	:

Description

BnaC03g09500D

Coordinates

chrLK031791:-:2506696..2508797

Molecular Weight (calculated)

39784.2 Da

IEP (calculated)

8.478

GRAVY (calculated)

-0.018

Length

368 amino acids

Sequence
(BLAST)

001: MLVKHCVISA LTRSTSHSPS SSSSTVLRRQ QFLVRTLCAS RTHLPKLIKA MSSTSEADAE SVLRTVTPTL DPKRHKGQAG KIAVIGGCRE YTGAPYFAAF
101: SALKIGADLS HVFCTKDAAP VIKSYSPELI VHPVLEESYT ISEEEKRKVQ DKVIGEVDKW MERFDCLVIG PGLGRDPFLL ECVSKIMLLA KKFNVPFVVD
201: GDGLFLVTDS IDLVRSYPLA VLTPNVNEYK RLVQNVLNCE VDEENAGDQL RSLAKQIGGV TILRKGKTDL ISNGEILKSV SVYGSPRRCG GQGDILSGGV
301: AVFLSWAKQL KPDPGSHSES PAILGCIAAS GLLRKAASLA FKKHKRSTLT GDIIECLGES LEDICPAS

Best Arabidopsis Sequence Match ( AT5G19150.2 )
(BLAST)

001: MLVKPSIISG LVRLTSHSPS SSSSVLRRQE FLVRTLCGSP IIRAMSSTSE ADAESVLRTV TPSLDLKRHK GQAGKIAVIG GCREYTGAPY FAAISALKIG
101: ADLSHVFCTK DAAPVIKSYS PELIVHPVLE ESYSISQLSE EDKREVQDKV LGEVGKWMER FDCLVIGPGL GRDPFLLECV SIIMLLAKKS NVPFVIDGDG
201: LFLVTNSIDL VHSYPLAVLT PNVNEYKRLV QKVLNCEVDE QNAEDQLRSL AKQIGGVTIL RKGKSDLISN GETVKSVSIY GSPRRCGGQG DILSGGVAVF
301: LSWAQQLKSD PESPSENPAI LGCIAASGLL RKAASLAFTK HKRSTLTSDI IECLGESLED ICPAS

Arabidopsis Description

ATP-dependent (S)-NAD(P)H-hydrate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A178UA58]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.