CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70866
CDX88899
CDY02580
CDY47201
CDY59013
CDY59025
CDY66931

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19150.1	CDX70866	AT5G19150.1	21798944
AT5G19150.1	CDX88899	AT5G19150.1	21798944
AT5G19150.1	CDY02580	AT5G19150.1	21798944
AT5G19150.1	CDY47201	AT5G19150.1	21798944
AT5G19150.1	CDY59013	AT5G19150.1	21798944
AT5G19150.1	CDY59025	AT5G19150.1	21798944
AT5G19150.1	CDY66931	AT5G19150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023708.1-P	Field mustard	cytosol	96.26	96.26
CDY47201	Canola	cytosol	96.26	96.26
CDY59025	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	32.71	92.92
AT5G19150.1	Thale cress	plastid	90.97	80.0
CDX88899	Canola	plastid	91.59	79.25
CDX70866	Canola	plastid	88.47	77.17
CDY66931	Canola	plastid	87.23	76.5
CDY59013	Canola	plastid	80.69	75.51
PGSC0003DMT400023297	Potato	plastid	67.91	72.19
Solyc01g079860.2.1	Tomato	cytosol, extracellular, plastid	71.34	71.12
VIT_05s0020g02800.t01	Wine grape	mitochondrion	75.7	68.64
KRH02108	Soybean	cytosol	72.27	63.04
Os11t0276300-01	Rice	mitochondrion	68.85	59.57
GSMUA_Achr6P21250_001	Banana	plastid	68.85	59.41
KXG28294	Sorghum	plastid	69.47	56.17
KRH51040	Soybean	cytosol	72.27	55.24
Zm00001d049088_P002	Maize	mitochondrion	70.09	54.74
HORVU4Hr1G014230.4	Barley	mitochondrion	69.47	54.13
TraesCS4B01G082200.1	Wheat	mitochondrion	62.62	52.89
TraesCS4D01G080700.2	Wheat	plastid	63.24	52.73
TraesCS4A01G233500.1	Wheat	plastid	62.93	52.47

Protein Annotations

EnsemblPlants:CDY02580	EnsemblPlantsGene:GSBRNA2T00114680001	Gene3D:3.40.1190.20	GO:A0A078EKN9	GO:GO:0003674	GO:GO:0003824
GO:GO:0052855	HAMAP:MF_01965	InterPro:CARKD	InterPro:IPR000631	InterPro:IPR029056	InterPro:Ribokinase-like
PANTHER:PTHR12592	PANTHER:PTHR12592:SF0	PFAM:PF01256	PFscan:PS51383	ProteinID:CDY02580	ProteinID:CDY02580.1
SEG:seg	SUPFAM:SSF53613	TIGRFAMs:TIGR00196	UniParc:UPI0004EBA492	MapMan:35.1	:

Description

BnaC02g08550D

Coordinates

chrLK031936:+:77033..78983

Molecular Weight (calculated)

34674.8 Da

IEP (calculated)

5.439

GRAVY (calculated)

0.068

Length

321 amino acids

Sequence
(BLAST)

001: MSSTTEADAE SVLRLVTPSL DLKRHKGQAG KIAVIGGCRE YTGAPYFAAI SALKIGADLS HVFCTKDAAP VIKSYSPELI VHPVLEESYT ISHFSEEERR
101: QVQEKVVGEV EKWMEIFDCL VIGPGLGRDP FLLECVSEIM LLARKFNVPF VVDGDGLFLV TNSIDLVNSY PLAVLTPNVN EYKRLVQKVM NCEVDEENTG
201: DQLRSLAKQI GGVTILRKGK SDLISNGEIV KSVSIYGSPR RCGGQGDILS GSVAVFLSWS QQLISGHESL SENPAILGCI AASGLLRKAA SLAFTKHKRS
301: TLTSDIIGCL GESLEDICPA S

Best Arabidopsis Sequence Match ( AT5G19150.2 )
(BLAST)

001: MLVKPSIISG LVRLTSHSPS SSSSVLRRQE FLVRTLCGSP IIRAMSSTSE ADAESVLRTV TPSLDLKRHK GQAGKIAVIG GCREYTGAPY FAAISALKIG
101: ADLSHVFCTK DAAPVIKSYS PELIVHPVLE ESYSISQLSE EDKREVQDKV LGEVGKWMER FDCLVIGPGL GRDPFLLECV SIIMLLAKKS NVPFVIDGDG
201: LFLVTNSIDL VHSYPLAVLT PNVNEYKRLV QKVLNCEVDE QNAEDQLRSL AKQIGGVTIL RKGKSDLISN GETVKSVSIY GSPRRCGGQG DILSGGVAVF
301: LSWAQQLKSD PESPSENPAI LGCIAASGLL RKAASLAFTK HKRSTLTSDI IECLGESLED ICPAS

Arabidopsis Description

ATP-dependent (S)-NAD(P)H-hydrate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A178UA58]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.