CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02108
KRH51040

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19150.1	KRH02108	AT5G19150.1	21798944
AT5G19150.1	KRH51040	AT5G19150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51040	Soybean	cytosol	91.85	80.48
VIT_05s0020g02800.t01	Wine grape	mitochondrion	73.64	76.55
PGSC0003DMT400023297	Potato	plastid	62.23	75.83
Solyc01g079860.2.1	Tomato	cytosol, extracellular, plastid	65.76	75.16
Bra023708.1-P	Field mustard	cytosol	63.59	72.9
CDY47201	Canola	cytosol	63.59	72.9
CDY59025	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	22.28	72.57
CDY02580	Canola	cytosol	63.04	72.27
AT5G19150.1	Thale cress	plastid	67.93	68.49
CDX88899	Canola	plastid	67.66	67.12
Bra006496.1-P	Field mustard	plastid	67.12	66.58
GSMUA_Achr6P21250_001	Banana	plastid	67.12	66.4
CDX70866	Canola	plastid	66.3	66.3
CDY66931	Canola	plastid	63.86	64.21
CDY59013	Canola	plastid	58.97	63.27
Os11t0276300-01	Rice	mitochondrion	63.32	62.8
KXG28294	Sorghum	plastid	64.13	59.45
TraesCS4B01G082200.1	Wheat	mitochondrion	58.7	56.84
TraesCS4D01G080700.2	Wheat	plastid	58.7	56.1
Zm00001d049088_P002	Maize	mitochondrion	62.5	55.96
TraesCS4A01G233500.1	Wheat	plastid	58.15	55.58
HORVU4Hr1G014230.4	Barley	mitochondrion	61.41	54.85

Protein Annotations

EntrezGene:100808704	Gene3D:3.40.1190.20	MapMan:35.1	EMBL:ACUP02010293	InterPro:CARKD	EnsemblPlantsGene:GLYMA_17G016200
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016829	GO:GO:0046496	GO:GO:0047453
GO:GO:0052855	UniProt:I1MR81	InterPro:IPR000631	InterPro:IPR029056	ProteinID:KRH02106.1	ProteinID:KRH02107.1
EnsemblPlants:KRH02108	ProteinID:KRH02108	ProteinID:KRH02108.1	ProteinID:KRH02109.1	ProteinID:KRH02110.1	HAMAP:MF_01965
PFAM:PF01256	PFscan:PS51383	PANTHER:PTHR12592	PANTHER:PTHR12592:SF0	InterPro:Ribokinase-like	SUPFAM:SSF53613
TIGRFAMs:TIGR00196	UniParc:UPI000233EDB2	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:1201648..1206044

Molecular Weight (calculated)

39584.8 Da

IEP (calculated)

7.874

GRAVY (calculated)

0.053

Length

368 amino acids

Sequence
(BLAST)

001: MRDGMNYRIL LDSAKSCILA SSVPRRQQFL IRCVGGSIDH RHRDMQALRS LEVDSQTVIR AITPALDPTR HKGQAGNIAV IGGCREYTGA PYFAAISALK
101: IGADLSHVFC TKDAAPVIKS YSPELIVHPV LEESYNVGEE HKSSIASKVL AEVDKWLERF DCLVVGPGLG RDPFLLDCVS EIMRHARRSN IPIVIDGDGL
201: FLVTNNLELV SGYALAVLTP NVNEYKRLVQ KVLSSEVNDI DAPQQLLSLA KQIGGVTILS KGNSDLISDG DTVKSVSVYG SPRRCGGQGD ILSGSVAVFL
301: SWARQHILAA DSNSNLSCKN PIVLGCIAGS AILRKAASLA FSNKKRSTVT GDIIECLGRS LEDISPAC

Best Arabidopsis Sequence Match ( AT5G19150.1 )
(BLAST)

001: MLVKPSIISG LVRLTSHSPS SSSSVLRRQE FLVRTLCGSP IIRAMSSTSE ADAESVLRTV TPSLDLKRHK GQAGKIAVIG GCREYTGAPY FAAISALKIG
101: ADLSHVFCTK DAAPVIKSYS PELIVHPVLE ESYSISQLSE EDKREVQDKV LGEVGKWMER FDCLVIGPGL GRDPFLLECV SIIMLLAKKS NVPFVIDGDG
201: LFLVTNSIDL VHSYPLAVLT PNVNEYKRLV QKVLNCEVDE QNAEDQLRSL AKQIGGVTIL RKGKSDLISN GETVKSVSIY GSPRRCGGQG DILSGGVAVF
301: LSWAQQLKSD PESPSENPAI LGCIAASGLL RKAASLAFTK HKRSTLTSDI IECLGESLED ICPAS

Arabidopsis Description

ATP-dependent (S)-NAD(P)H-hydrate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A178UA58]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.