Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY59025 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 28.77 | 92.92 |
| Bra023708.1-P | Field mustard | cytosol | 80.55 | 91.59 |
| CDY47201 | Canola | cytosol | 80.27 | 91.28 |
| CDY02580 | Canola | cytosol | 80.0 | 90.97 |
| CDX88899 | Canola | plastid | 89.04 | 87.6 |
| Bra006496.1-P | Field mustard | plastid | 88.77 | 87.33 |
| CDX70866 | Canola | plastid | 85.48 | 84.78 |
| CDY59013 | Canola | plastid | 78.08 | 83.09 |
| CDY66931 | Canola | plastid | 82.47 | 82.24 |
| VIT_05s0020g02800.t01 | Wine grape | mitochondrion | 71.78 | 74.01 |
| PGSC0003DMT400023297 | Potato | plastid | 61.1 | 73.84 |
| Solyc01g079860.2.1 | Tomato | cytosol, extracellular, plastid | 63.84 | 72.36 |
| KRH02108 | Soybean | cytosol | 68.49 | 67.93 |
| GSMUA_Achr6P21250_001 | Banana | plastid | 65.48 | 64.25 |
| Os11t0276300-01 | Rice | mitochondrion | 63.84 | 62.8 |
| KXG28294 | Sorghum | plastid | 64.93 | 59.7 |
| KRH51040 | Soybean | cytosol | 68.49 | 59.52 |
| Zm00001d049088_P002 | Maize | mitochondrion | 63.84 | 56.69 |
| TraesCS4D01G080700.2 | Wheat | plastid | 59.45 | 56.36 |
| TraesCS4B01G082200.1 | Wheat | mitochondrion | 58.63 | 56.32 |
| TraesCS4A01G233500.1 | Wheat | plastid | 58.9 | 55.84 |
| HORVU4Hr1G014230.4 | Barley | mitochondrion | 63.01 | 55.83 |
Protein Annotations
| Gene3D:3.40.1190.20 | MapMan:35.1 | EntrezGene:832035 | UniProt:A0A178UA58 | EMBL:AC069326 | ProteinID:AED92660.1 |
| ProteinID:AED92661.1 | ArrayExpress:AT5G19150 | EnsemblPlantsGene:AT5G19150 | RefSeq:AT5G19150 | TAIR:AT5G19150 | RefSeq:AT5G19150-TAIR-G |
| EnsemblPlants:AT5G19150.1 | TAIR:AT5G19150.1 | EMBL:AY048225 | EMBL:AY101541 | Unigene:At.26189 | InterPro:CARKD |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005829 | GO:GO:0006139 |
| GO:GO:0006734 | GO:GO:0006739 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009987 | GO:GO:0016829 | GO:GO:0046496 | GO:GO:0047453 | GO:GO:0052855 | GO:GO:0052856 |
| GO:GO:0052857 | InterPro:IPR000631 | InterPro:IPR029056 | HAMAP:MF_01965 | RefSeq:NP_568369.1 | RefSeq:NP_974811.1 |
| ProteinID:OAO89541.1 | PFAM:PF01256 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51383 | PANTHER:PTHR12592 | PANTHER:PTHR12592:SF0 | UniProt:Q94AF2 |
| InterPro:Ribokinase-like | SUPFAM:SSF53613 | TIGRFAMs:TIGR00196 | UniParc:UPI00000A2F86 | SEG:seg | : |
Description
ATP-dependent (S)-NAD(P)H-hydrate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A178UA58]
Coordinates
chr5:-:6426071..6428468
Molecular Weight (calculated)
39271.5 Da
IEP (calculated)
7.043
GRAVY (calculated)
0.037
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVKPSIISG LVRLTSHSPS SSSSVLRRQE FLVRTLCGSP IIRAMSSTSE ADAESVLRTV TPSLDLKRHK GQAGKIAVIG GCREYTGAPY FAAISALKIG
101: ADLSHVFCTK DAAPVIKSYS PELIVHPVLE ESYSISQLSE EDKREVQDKV LGEVGKWMER FDCLVIGPGL GRDPFLLECV SIIMLLAKKS NVPFVIDGDG
201: LFLVTNSIDL VHSYPLAVLT PNVNEYKRLV QKVLNCEVDE QNAEDQLRSL AKQIGGVTIL RKGKSDLISN GETVKSVSIY GSPRRCGGQG DILSGGVAVF
301: LSWAQQLKSD PESPSENPAI LGCIAASGLL RKAASLAFTK HKRSTLTSDI IECLGESLED ICPAS
101: ADLSHVFCTK DAAPVIKSYS PELIVHPVLE ESYSISQLSE EDKREVQDKV LGEVGKWMER FDCLVIGPGL GRDPFLLECV SIIMLLAKKS NVPFVIDGDG
201: LFLVTNSIDL VHSYPLAVLT PNVNEYKRLV QKVLNCEVDE QNAEDQLRSL AKQIGGVTIL RKGKSDLISN GETVKSVSIY GSPRRCGGQG DILSGGVAVF
301: LSWAQQLKSD PESPSENPAI LGCIAASGLL RKAASLAFTK HKRSTLTSDI IECLGESLED ICPAS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.