Factsheet for VIT_05s0020g02800.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g02800.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19150.1	VIT_05s0020g02800.t01	AT5G19150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023297	Potato	plastid	67.8	79.47
CDY59025	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	25.14	78.76
Solyc01g079860.2.1	Tomato	cytosol, extracellular, plastid	70.34	77.33
CDY47201	Canola	cytosol	69.21	76.32
Bra023708.1-P	Field mustard	cytosol	68.64	75.7
CDY02580	Canola	cytosol	68.64	75.7
KRH02108	Soybean	cytosol	76.55	73.64
AT5G19150.1	Thale cress	plastid	74.01	71.78
GSMUA_Achr6P21250_001	Banana	plastid	72.32	68.82
CDX88899	Canola	plastid	71.75	68.46
Bra006496.1-P	Field mustard	plastid	71.19	67.92
CDX70866	Canola	plastid	69.77	67.12
KRH51040	Soybean	cytosol	78.25	65.95
CDY66931	Canola	plastid	67.51	65.3
Os11t0276300-01	Rice	mitochondrion	67.51	64.42
CDY59013	Canola	plastid	61.58	63.56
KXG28294	Sorghum	plastid	68.08	60.71
TraesCS4B01G082200.1	Wheat	mitochondrion	62.43	58.16
TraesCS4D01G080700.2	Wheat	plastid	62.43	57.4
TraesCS4A01G233500.1	Wheat	plastid	62.15	57.14
Zm00001d049088_P002	Maize	mitochondrion	65.54	56.45
HORVU4Hr1G014230.4	Barley	mitochondrion	65.54	56.31

Protein Annotations

EntrezGene:100244161	wikigene:100244161	Gene3D:3.40.1190.20	MapMan:35.1	InterPro:CARKD	ProteinID:CCB50393
ProteinID:CCB50393.1	UniProt:F6HDM2	EMBL:FN595749	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0016829	GO:GO:0047453	GO:GO:0052855	InterPro:IPR000631
InterPro:IPR029056	EntrezGene:LOC100244161	wikigene:LOC100244161	HAMAP:MF_01965	PFAM:PF01256	PFscan:PS51383
PANTHER:PTHR12592	PANTHER:PTHR12592:SF0	InterPro:Ribokinase-like	SUPFAM:SSF53613	TIGR:TC56989	TIGRFAMs:TIGR00196
UniParc:UPI0002109B10	ArrayExpress:VIT_05s0020g02800	EnsemblPlantsGene:VIT_05s0020g02800	EnsemblPlants:VIT_05s0020g02800.t01	unigene:Vvi.18943	RefSeq:XP_002280838
RefSeq:XP_002280838.1	:	:	:	:	:

Description

ATP-dependent (S)-NAD(P)H-hydrate dehydratase [Source:UniProtKB/Swiss-Prot;Acc:F6HDM2]

Coordinates

chr5:-:4495946..4502757

Molecular Weight (calculated)

38110.3 Da

IEP (calculated)

8.134

GRAVY (calculated)

0.050

Length

354 amino acids

Sequence
(BLAST)

001: MLASSAVFRR QEFLIRCLGV GGQSQQFYRK SIPRTMALEA DAENILRAIT PTLDLARHKG QAGKIAVIGG CREYTGAPYF SAISALKIGA DLSHVFCTKD
101: AAPVIKSYSP ELIVHPLLEE SYSVREEDKK AISEKVLTEV VKWMERFDCL VVGPGLGRDP FLLGCVSEIM KHARQSNVPI VIDGDGLFLV TNSLDLVSGY
201: PLAVLTPNVN EYKRLVQKVL NCEVGDQDAA EQLLSLAKGI GGVTILRKGK SDLISDGETV NSVGIYGSPR RCGGQGDILS GSVAVFLSWA RQRIIAEGDL
301: NISPKSPTVL GSIAGSALMR KAASLAFENK KRSTLTGDII ECLGRSLEDI CPAK

Best Arabidopsis Sequence Match ( AT5G19150.2 )
(BLAST)

001: MLVKPSIISG LVRLTSHSPS SSSSVLRRQE FLVRTLCGSP IIRAMSSTSE ADAESVLRTV TPSLDLKRHK GQAGKIAVIG GCREYTGAPY FAAISALKIG
101: ADLSHVFCTK DAAPVIKSYS PELIVHPVLE ESYSISQLSE EDKREVQDKV LGEVGKWMER FDCLVIGPGL GRDPFLLECV SIIMLLAKKS NVPFVIDGDG
201: LFLVTNSIDL VHSYPLAVLT PNVNEYKRLV QKVLNCEVDE QNAEDQLRSL AKQIGGVTIL RKGKSDLISN GETVKSVSIY GSPRRCGGQG DILSGGVAVF
301: LSWAQQLKSD PESPSENPAI LGCIAASGLL RKAASLAFTK HKRSTLTSDI IECLGESLED ICPAS

Arabidopsis Description

ATP-dependent (S)-NAD(P)H-hydrate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A178UA58]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.