CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69609
CDX70540
CDX78558
CDX85614
CDX86457
CDX91084
CDY05264
CDY14839
CDY22564
CDY24692
CDY35376
CDY40739
CDY44781
CDY47975
CDY58422
CDY58518
CDY66333

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00980.1	CDY14839	AT2G42490.1	21798944
AT4G00980.1	CDY22564	AT2G42490.1	21798944
AT4G00980.1	CDY35376	AT2G42490.1	21798944
AT4G00980.1	CDY47975	AT2G42490.1	21798944
AT4G00980.1	CDY05264	AT3G06430.1	21798944
AT4G00980.1	CDY24692	AT3G06430.1	21798944
AT4G00980.1	CDX86457	AT3G27960.1	21798944
AT4G00980.1	CDY58518	AT3G27960.1	21798944
AT4G00980.1	CDY66333	AT4G15700.1	21798944
AT4G00980.1	CDY40739	AT5G08650.1	21798944
AT4G00980.1	CDY44781	AT5G08650.1	21798944
AT4G00980.1	CDX69609	AT5G14070.1	21798944
AT4G00980.1	CDX70540	AT5G14070.1	21798944
AT4G00980.1	CDX78558	AT5G14070.1	21798944
AT4G00980.1	CDX85614	AT5G14070.1	21798944
AT4G00980.1	CDX91084	AT5G14070.1	21798944
AT4G00980.1	CDY58422	AT5G14070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037396.1-P	Field mustard	nucleus	98.28	98.71
CDY07161	Canola	nucleus	92.92	93.52
AT4G00980.1	Thale cress	nucleus	67.6	64.55
CDY05125	Canola	nucleus	12.88	37.5
CDX90784	Canola	nucleus	13.09	36.97
KRH68921	Soybean	nucleus	36.48	30.47
KRG97195	Soybean	endoplasmic reticulum, golgi, vacuole	35.41	30.11
Os01t0706000-01	Rice	nucleus	11.8	29.89
GSMUA_Achr8P05370_001	Banana	nucleus	10.09	27.65
KXG33215	Sorghum	nucleus	10.52	26.78
TraesCS3B01G284700.1	Wheat	nucleus	10.73	26.18
TraesCS3B01G288800.1	Wheat	nucleus	10.52	25.79
TraesCS3D01G253600.1	Wheat	nucleus	10.52	25.65
TraesCS3A01G256000.1	Wheat	nucleus	10.3	25.26
Zm00001d011680_P002	Maize	cytosol	11.16	24.88
CDY40729	Canola	nucleus	5.36	23.36
CDY44791	Canola	nucleus	4.94	21.5
CDY21570	Canola	nucleus	4.72	20.56
CDX69917	Canola	nucleus	4.72	20.56
HORVU3Hr1G066410.6	Barley	cytosol	7.51	18.52
Zm00001d043705_P005	Maize	nucleus	10.52	12.22

Protein Annotations

Gene3D:2.30.31.10	MapMan:35.1	GO:A0A078IEQ3	UniProt:A0A078IEQ3	EnsemblPlants:CDY48492	ProteinID:CDY48492
ProteinID:CDY48492.1	InterPro:DEK_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003713
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00091190001	InterPro:IPR001878	InterPro:IPR009044	InterPro:PC4
PFAM:PF02229	PFAM:PF08766	PFAM:PF14223	PFscan:PS50158	PANTHER:PTHR11439	PANTHER:PTHR11439:SF227
SUPFAM:SSF54447	UniParc:UPI0004EEA211	InterPro:Znf_CCHC	SEG:seg	InterPro:ssDNA-bd_transcriptional_reg	:

Description

BnaA09g00310DBnaA09g00310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IEQ3]

Coordinates

chrLK032776:-:6003..8009

Molecular Weight (calculated)

53005.7 Da

IEP (calculated)

8.536

GRAVY (calculated)

-0.716

Length

466 amino acids

Sequence
(BLAST)

001: MEMVPRTTQK KIEETVKGIL READMDLMTE FKLRISASSI LGFDLSGANH KKLVRDVLEA FLLSNPSDDE TVAPVDPNPP PTATASAGGG EDERFICKLS
101: EKRNATVQKY RGQPFLSLGE SSKEDGKPFR GVHLSANQWS VIKKNFSAIE EAIKQSESKS KSESKQNGDT SKHVEDNTSF SFSIIETSRF DGRGYLRWAS
201: QMELFLKQLN LSYVLSKPCP VTNTSQPDPA GKKWLKDDYI CYTHLLNSLS DHLHRQYSKK FKHAKELWEE LKWVYQCDES NSKRSQVRKY IEFQMVEDRP
301: VLDQVQDFNK IADSIVSAGM FLDETFHVST IISKFPPSWR GFSTRLMEEE FLPVWMLMER VKAEEEEVLR NGPQRVTYRP ATGSCQMERM PPSIGRGWKR
401: KEPERDGRVS IVCDNCGRRG HLAKNCWGKT VEERASGKPN RVTFSSTSPV GSETQATTKN DSRTIS

Best Arabidopsis Sequence Match ( AT4G00980.1 )
(BLAST)

001: MENSLLDSGE TMEIVATQKI EETVKSILSE SDMDQMTEFK LRLDASAKLG IDLSGTNHKK LVRDVLEVFL LSTPGEALVP ETVAPAKNET VSVAAASVGG
101: EDERFICKLS EKQNATVQRY RGQPFLSIGS QEHGKAFRGA HLSTNQWSVI KKNFAAIEDG IKQCQSKLKS EAARNGDTSE AVDKDSSHGF SVIKISRFDG
201: KSYLYWASQM ELFLKQLKLT YVLSEPCPSI GSSQGPETNP REITRADATG KKWLRDDYLC YTHLMNSLSD HLYRRYSQKF KHAKELWDEL KWVYQCDESK
301: SKRSQVRKYI EFRMVEERPI LEQVQVFNKI ADSIVSAGMF LDEAFHVSTI ISKFPPSWRG FCTRLMEEEY LPVWMLMERV KAEEELLRNG AKGVTYRPAT
401: GSSQMERTPS LGTTHRGSQS VGWKRKEPER DERVIIVCDN CGRKGHLAKH CWGSKSDERA SGKSNRINSS VAAPVESETQ ATTNNDRG

Arabidopsis Description

At4g00980 [Source:UniProtKB/TrEMBL;Acc:Q8GXX5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.