CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, vacuole

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
endoplasmic reticulum 4
extracellular 3
vacuole 4
plasma membrane 3
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, vacuole
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93305
KRG94592
KRG99420
KRH01571
KRH02371
KRH02451
KRH06898
KRH11237
KRH21036
KRH37687
KRH42544
KRH45608
KRH53996
KRH56614
KRH58636
KRH63943
KRH69629
KRH70543

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00980.1	KRH42544	AT1G14920.1	21798944
AT4G00980.1	KRH58636	AT1G14920.1	21798944
AT4G00980.1	KRG99420	AT2G42490.1	21798944
AT4G00980.1	KRH45608	AT2G42490.1	21798944
AT4G00980.1	KRH69629	AT2G42490.1	21798944
AT4G00980.1	KRH02371	AT3G06430.1	21798944
AT4G00980.1	KRH02451	AT3G06430.1	21798944
AT4G00980.1	KRH37687	AT3G06430.1	21798944
AT4G00980.1	KRG93305	AT3G27960.1	21798944
AT4G00980.1	KRH56614	AT3G27960.1	21798944
AT4G00980.1	KRH11237	AT4G15700.1	21798944
AT4G00980.1	KRH21036	AT4G15700.1	21798944
AT4G00980.1	KRH53996	AT5G08650.1	21798944
AT4G00980.1	KRH63943	AT5G08650.1	21798944
AT4G00980.1	KRG94592	AT5G14070.1	21798944
AT4G00980.1	KRH01571	AT5G14070.1	21798944
AT4G00980.1	KRH06898	AT5G14070.1	21798944
AT4G00980.1	KRH70543	AT5G14070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68921	Soybean	nucleus	74.82	73.48
KRH60062	Soybean	nucleus	13.5	44.58
Os01t0706000-01	Rice	nucleus	14.42	42.93
GSMUA_Achr8P05370_001	Banana	nucleus	12.41	40.0
TraesCS3A01G256000.1	Wheat	nucleus	13.5	38.95
KXG33215	Sorghum	nucleus	12.77	38.25
TraesCS3B01G288800.1	Wheat	nucleus	13.14	37.89
TraesCS3B01G284700.1	Wheat	nucleus	13.14	37.7
KRH41342	Soybean	nucleus	13.69	37.69
TraesCS3D01G253600.1	Wheat	nucleus	12.96	37.17
Zm00001d011680_P002	Maize	cytosol	13.69	35.89
AT4G00980.1	Thale cress	nucleus	31.75	35.66
CDY07161	Canola	nucleus	30.11	35.64
CDY48492	Canola	nucleus	30.11	35.41
Bra037396.1-P	Field mustard	nucleus	29.93	35.34
KRH53937	Soybean	nucleus	6.2	32.38
HORVU3Hr1G066410.6	Barley	cytosol	9.85	28.57
KRH64003	Soybean	nucleus	5.84	27.83
Zm00001d043705_P005	Maize	nucleus	13.5	18.45

Protein Annotations

EntrezGene:100800963	Gene3D:2.30.31.10	MapMan:35.1	EMBL:ACUP02012179	InterPro:DEK_C	EnsemblPlantsGene:GLYMA_19G256500
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003713	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0060261	InterPro:IPR001878	InterPro:IPR009044	UniProt:K7N0C0
EnsemblPlants:KRG97195	ProteinID:KRG97195	ProteinID:KRG97195.1	InterPro:PC4	PFAM:PF02229	PFAM:PF08766
PFAM:PF14223	PFscan:PS50158	PANTHER:PTHR13215	PANTHER:PTHR13215:SF6	SUPFAM:SSF54447	TMHMM:TMhelix
UniParc:UPI000295DE6F	InterPro:Znf_CCHC	SEG:seg	InterPro:ssDNA-bd_transcriptional_reg	:	:

Description

hypothetical protein

Coordinates

chr19:+:50048972..50053566

Molecular Weight (calculated)

62345.5 Da

IEP (calculated)

7.289

GRAVY (calculated)

-0.526

Length

548 amino acids

Sequence
(BLAST)

001: MICSCSRIKG VSPLSVWFLC NVTLGFFILF YFAMETETRR KVEEMVLDIL KKSNIEEATE FTIRVAASER LGIDLSDSPS RHFVRTVVES YLLSVAANEI
101: SKDAEKKENE DIAAKNDDDV KKGDVVAVPK LKRDDPERVI CQLSSRRNLA VKHFKGTTLV SIREFYMKDG KLLPGSKGIS LSSEQWSTFK KSVPAIEEAI
201: KKMEGRIRLE PNGKQNGDAS NSAVDVALEP NGKQNGDASN SVVDVAPLEP HGKQNGDASN SVVDVAALEP VVPIEVIRLD GKNFQSWARQ MELLLKQLKV
301: DYVLDEPCPN PTLGESAKAE DIATAKAAER RWLNDDLTCH RNILSHLSDP LYNLYANRKL SAKDLWEELK LVYLYEEFGT KRYHVKKYLE FQMVEEKAVI
401: EQIRELNGMA DSIAAAGMFI DDNFHVSAII SKLPPSWKDF CIKLMREEYL PYRKLMERIQ IEEEYRYGVK RVVEHSNSME GYHQAYNGGH RRADYKPLGM
501: CRNRSEINAR SVPCSVCGKR GHLSKHCWRR NDKQTNERKS EEDERIPT

Best Arabidopsis Sequence Match ( AT4G00980.1 )
(BLAST)

001: MENSLLDSGE TMEIVATQKI EETVKSILSE SDMDQMTEFK LRLDASAKLG IDLSGTNHKK LVRDVLEVFL LSTPGEALVP ETVAPAKNET VSVAAASVGG
101: EDERFICKLS EKQNATVQRY RGQPFLSIGS QEHGKAFRGA HLSTNQWSVI KKNFAAIEDG IKQCQSKLKS EAARNGDTSE AVDKDSSHGF SVIKISRFDG
201: KSYLYWASQM ELFLKQLKLT YVLSEPCPSI GSSQGPETNP REITRADATG KKWLRDDYLC YTHLMNSLSD HLYRRYSQKF KHAKELWDEL KWVYQCDESK
301: SKRSQVRKYI EFRMVEERPI LEQVQVFNKI ADSIVSAGMF LDEAFHVSTI ISKFPPSWRG FCTRLMEEEY LPVWMLMERV KAEEELLRNG AKGVTYRPAT
401: GSSQMERTPS LGTTHRGSQS VGWKRKEPER DERVIIVCDN CGRKGHLAKH CWGSKSDERA SGKSNRINSS VAAPVESETQ ATTNNDRG

Arabidopsis Description

At4g00980 [Source:UniProtKB/TrEMBL;Acc:Q8GXX5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.