Factsheet for Bra037396.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006236.1-P
Bra008782.1-P
Bra016871.1-P
Bra020748.1-P
Bra023448.1-P
Bra025315.1-P
Bra028651.1-P
Bra033501.1-P
Bra033503.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00980.1	Bra016871.1-P	AT2G42490.1	21798944
AT4G00980.1	Bra020748.1-P	AT3G06430.1	21798944
AT4G00980.1	Bra025315.1-P	AT3G27960.1	21798944
AT4G00980.1	Bra033501.1-P	AT4G15700.1	21798944
AT4G00980.1	Bra033503.1-P	AT4G15700.1	21798944
AT4G00980.1	Bra028651.1-P	AT5G08650.1	21798944
AT4G00980.1	Bra006236.1-P	AT5G14070.1	21798944
AT4G00980.1	Bra008782.1-P	AT5G14070.1	21798944
AT4G00980.1	Bra023448.1-P	AT5G14070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48492	Canola	nucleus	98.71	98.28
CDY07161	Canola	nucleus	92.46	92.66
AT4G00980.1	Thale cress	nucleus	67.89	64.55
Bra000728.1-P	Field mustard	nucleus	13.15	37.42
KRH68921	Soybean	nucleus	36.85	30.65
KRG97195	Soybean	endoplasmic reticulum, golgi, vacuole	35.34	29.93
Os01t0706000-01	Rice	nucleus	11.85	29.89
GSMUA_Achr8P05370_001	Banana	nucleus	10.13	27.65
KXG33215	Sorghum	nucleus	10.56	26.78
TraesCS3B01G284700.1	Wheat	nucleus	10.78	26.18
TraesCS3B01G288800.1	Wheat	nucleus	10.56	25.79
TraesCS3D01G253600.1	Wheat	nucleus	10.56	25.65
TraesCS3A01G256000.1	Wheat	nucleus	10.34	25.26
Zm00001d011680_P002	Maize	cytosol	11.21	24.88
Bra028642.1-P	Field mustard	nucleus	4.53	19.63
Bra009372.1-P	Field mustard	nucleus	4.31	18.69
HORVU3Hr1G066410.6	Barley	cytosol	7.54	18.52
Zm00001d043705_P005	Maize	nucleus	10.56	12.22

Protein Annotations

Gene3D:2.30.31.10	MapMan:35.1	EnsemblPlantsGene:Bra037396	EnsemblPlants:Bra037396.1	EnsemblPlants:Bra037396.1-P	InterPro:DEK_C
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003713	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001878	InterPro:IPR009044	UniProt:M4F8I4	InterPro:PC4	PFAM:PF02229	PFAM:PF08766
PFAM:PF14223	PFscan:PS50158	PANTHER:PTHR11439	PANTHER:PTHR11439:SF227	SUPFAM:SSF54447	UniParc:UPI00025420EA
InterPro:Znf_CCHC	SEG:seg	InterPro:ssDNA-bd_transcriptional_reg	:	:	:

Description

AT4G00980 (E=1e-184) | zinc knuckle (CCHC-type) family protein

Coordinates

chrA09:-:731402..733310

Molecular Weight (calculated)

52732.4 Da

IEP (calculated)

8.536

GRAVY (calculated)

-0.703

Length

464 amino acids

Sequence
(BLAST)

001: MVPLTTQKKI EETVKGILRE ADMDLMTEFK LRISASSILG FDLSGTNHKK LVRDVLEAFL LSNPSDDETV APVDPNPPPT ATASAGGGED ERFICKLSEK
101: RNATVQKYRG QPFLSLGESS KEDGKPFRGV HLSANQWSVI KKNFSAIEEA IKQSESKSKS ESKQNGDTSK HVEDNTSFSF SIIETSRFDG RGYLRWASQM
201: ELFLKQLNLS YVLSKPCPVT NTSQPDPAGK KWLKDDYICY THLLNSLSDH LHRQYSKKFK HAKELWEELK WVYQCDESNS KRSQVRKYIE FQMVEDRPVL
301: DQVQDFNKIA DSIVSAGMFL DETFHVSTII SKFPPSWRGF STRLMEEEFL PVWMLMERVK AEEEEVLRNG PQRVTYRPAT GSCQMERMPP SIGRGWKRKE
401: PERDGRVSIV CDNCGRRGHL AKNCWGKTVE ERASGKPNRV TFSSTSPVGS ETQATTKNDS RTIS

Best Arabidopsis Sequence Match ( AT4G00980.1 )
(BLAST)

001: MENSLLDSGE TMEIVATQKI EETVKSILSE SDMDQMTEFK LRLDASAKLG IDLSGTNHKK LVRDVLEVFL LSTPGEALVP ETVAPAKNET VSVAAASVGG
101: EDERFICKLS EKQNATVQRY RGQPFLSIGS QEHGKAFRGA HLSTNQWSVI KKNFAAIEDG IKQCQSKLKS EAARNGDTSE AVDKDSSHGF SVIKISRFDG
201: KSYLYWASQM ELFLKQLKLT YVLSEPCPSI GSSQGPETNP REITRADATG KKWLRDDYLC YTHLMNSLSD HLYRRYSQKF KHAKELWDEL KWVYQCDESK
301: SKRSQVRKYI EFRMVEERPI LEQVQVFNKI ADSIVSAGMF LDEAFHVSTI ISKFPPSWRG FCTRLMEEEY LPVWMLMERV KAEEELLRNG AKGVTYRPAT
401: GSSQMERTPS LGTTHRGSQS VGWKRKEPER DERVIIVCDN CGRKGHLAKH CWGSKSDERA SGKSNRINSS VAAPVESETQ ATTNNDRG

Arabidopsis Description

At4g00980 [Source:UniProtKB/TrEMBL;Acc:Q8GXX5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.