Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G253600.1 | Wheat | nucleus | 49.21 | 48.69 |
| TraesCS3A01G256000.1 | Wheat | nucleus | 48.68 | 48.42 |
| TraesCS3B01G284700.1 | Wheat | nucleus | 48.68 | 48.17 |
| TraesCS3B01G288800.1 | Wheat | nucleus | 47.62 | 47.37 |
| Os01t0706000-01 | Rice | nucleus | 41.8 | 42.93 |
| KXG33215 | Sorghum | nucleus | 38.1 | 39.34 |
| Zm00001d011680_P002 | Maize | cytosol | 38.1 | 34.45 |
| CDY05125 | Canola | nucleus | 28.57 | 33.75 |
| Bra000728.1-P | Field mustard | nucleus | 28.57 | 33.13 |
| CDX90784 | Canola | nucleus | 28.57 | 32.73 |
| AT4G10920.2 | Thale cress | nucleus | 26.98 | 30.91 |
| GSMUA_Achr8P05370_001 | Banana | nucleus | 26.45 | 29.41 |
| PGSC0003DMT400031971 | Potato | nucleus | 26.45 | 29.41 |
| KRH60062 | Soybean | nucleus | 25.4 | 28.92 |
| VIT_02s0025g01700.t01 | Wine grape | nucleus | 28.57 | 28.88 |
| Solyc08g082580.2.1 | Tomato | nucleus | 26.45 | 28.57 |
| KRH41342 | Soybean | nucleus | 25.93 | 24.62 |
| Zm00001d043705_P005 | Maize | nucleus | 33.86 | 15.96 |
| HORVU5Hr1G079060.3 | Barley | cytosol, nucleus | 6.35 | 10.62 |
| KRG97195 | Soybean | endoplasmic reticulum, golgi, vacuole | 28.57 | 9.85 |
| KRH68921 | Soybean | nucleus | 26.98 | 9.14 |
| Bra037396.1-P | Field mustard | nucleus | 18.52 | 7.54 |
| CDY48492 | Canola | nucleus | 18.52 | 7.51 |
| CDY07161 | Canola | nucleus | 17.99 | 7.34 |
| AT4G00980.1 | Thale cress | nucleus | 18.52 | 7.17 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G066410.6 | EnsemblPlantsGene:HORVU3Hr1G066410 | InterPro:DEK_C | ncoils:Coil | PANTHER:PTHR13215 | PANTHER:PTHR13215:SF6 |
| PFAM:PF08766 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000B468AA2 | UniProt:A0A287LFC5 | MapMan:35.2 |
Description
No Description!
Coordinates
chrchr3H:-:505255868..505259401
Molecular Weight (calculated)
16002.2 Da
IEP (calculated)
8.884
GRAVY (calculated)
-0.513
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEKTQDKVE AAVLEILRGS DMESLTEYKV RTTAADRLGI DLDLPLHKRF VRRLVEDYLK SLAEEEDRKQ KGSSRKEAKK KQQRQEXXXX XXXXXXXXXX
101: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXGK ILVSTALFYF IRKLHHRFTW ISMTVEQWET FSKSVPAIED AIKTLGETD
101: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXGK ILVSTALFYF IRKLHHRFTW ISMTVEQWET FSKSVPAIED AIKTLGETD
001: MENSLLDSGE TMEIVATQKI EETVKSILSE SDMDQMTEFK LRLDASAKLG IDLSGTNHKK LVRDVLEVFL LSTPGEALVP ETVAPAKNET VSVAAASVGG
101: EDERFICKLS EKQNATVQRY RGQPFLSIGS QEHGKAFRGA HLSTNQWSVI KKNFAAIEDG IKQCQSKLKS EAARNGDTSE AVDKDSSHGF SVIKISRFDG
201: KSYLYWASQM ELFLKQLKLT YVLSEPCPSI GSSQGPETNP REITRADATG KKWLRDDYLC YTHLMNSLSD HLYRRYSQKF KHAKELWDEL KWVYQCDESK
301: SKRSQVRKYI EFRMVEERPI LEQVQVFNKI ADSIVSAGMF LDEAFHVSTI ISKFPPSWRG FCTRLMEEEY LPVWMLMERV KAEEELLRNG AKGVTYRPAT
401: GSSQMERTPS LGTTHRGSQS VGWKRKEPER DERVIIVCDN CGRKGHLAKH CWGSKSDERA SGKSNRINSS VAAPVESETQ ATTNNDRG
101: EDERFICKLS EKQNATVQRY RGQPFLSIGS QEHGKAFRGA HLSTNQWSVI KKNFAAIEDG IKQCQSKLKS EAARNGDTSE AVDKDSSHGF SVIKISRFDG
201: KSYLYWASQM ELFLKQLKLT YVLSEPCPSI GSSQGPETNP REITRADATG KKWLRDDYLC YTHLMNSLSD HLYRRYSQKF KHAKELWDEL KWVYQCDESK
301: SKRSQVRKYI EFRMVEERPI LEQVQVFNKI ADSIVSAGMF LDEAFHVSTI ISKFPPSWRG FCTRLMEEEY LPVWMLMERV KAEEELLRNG AKGVTYRPAT
401: GSSQMERTPS LGTTHRGSQS VGWKRKEPER DERVIIVCDN CGRKGHLAKH CWGSKSDERA SGKSNRINSS VAAPVESETQ ATTNNDRG
Arabidopsis Description
At4g00980 [Source:UniProtKB/TrEMBL;Acc:Q8GXX5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.