Factsheet for PGSC0003DMT400031971

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28506210

gfp PMID: 28506210 doi

J Bai, J Mao, H Yang, A Khan, A Fan, S Liu, J Zhang, D Wang, H Gao, J Zhang

College of Agronomy, Gansu Agricultural University, Lanzhou, 730070, Gansu, People's Republic of China., College of Agronomy, Gansu Agricultural University, Lanzhou, 730070, Gansu, People's Republic of China. baijp@gsau.edu.cn., College of Horticulture, Gansu Agricultural University, Lanzhou, 730070, Gansu, People's Republic of China., Gansu Key Lab of Crop Improvement & Germplasm Enhancement, Gansu Provincial Key Lab of Aridland Crop Science, Lanzhou, 730070, Gansu, People's Republic of China., Gansu Key Lab of Crop Improvement & Germplasm Enhancement, Gansu Provincial Key Lab of Aridland Crop Science, Lanzhou, 730070, Gansu, People's Republic of China. baijp@gsau.edu.cn., Gansu Key Lab of Crop Improvement & Germplasm Enhancement, Gansu Provincial Key Lab of Aridland Crop Science, Lanzhou, 730070, Gansu, People's Republic of China. jlzhang@lzu.edu.cn., International Potato Center (CIP), Avenida La Molina 1895, La Molina Apartado, 1558, Lima, Peru., State Key Laboratory of Grassland Agro-ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, 730020, Gansu, People's Republic of China., State Key Laboratory of Grassland Agro-ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, 730020, Gansu, People's Republic of China. jlzhang@lzu.edu.cn.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g082580.2.1	Tomato	nucleus	87.65	85.14
Bra000728.1-P	Field mustard	nucleus	55.88	58.28
CDX90784	Canola	nucleus	55.88	57.58
AT4G10920.2	Thale cress	nucleus	55.29	56.97
CDY05125	Canola	nucleus	52.94	56.25
Os01t0706000-01	Rice	nucleus	54.71	50.54
GSMUA_Achr8P05370_001	Banana	nucleus	47.65	47.65
TraesCS3A01G256000.1	Wheat	nucleus	52.35	46.84
KXG33215	Sorghum	nucleus	49.41	45.9
TraesCS3B01G284700.1	Wheat	nucleus	51.18	45.55
TraesCS3D01G253600.1	Wheat	nucleus	51.18	45.55
TraesCS3B01G288800.1	Wheat	nucleus	50.59	45.26
Zm00001d011680_P002	Maize	cytosol	49.41	40.19
PGSC0003DMT400022353	Potato	nucleus	18.24	30.1
HORVU3Hr1G066410.6	Barley	cytosol	29.41	26.45
Zm00001d043705_P005	Maize	nucleus	45.88	19.45

Protein Annotations

EntrezGene:102578505	Gene3D:2.30.31.10	MapMan:35.1	ncoils:Coil	InterPro:DEK_C	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003713	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR009044	InterPro:KELP
UniProt:M1AWL5	InterPro:PC4	PFAM:PF02229	PFAM:PF08766	EnsemblPlantsGene:PGSC0003DMG400012264	PGSC:PGSC0003DMG400012264
EnsemblPlants:PGSC0003DMT400031971	PIRSF:PIRSF038156	PANTHER:PTHR13215	PANTHER:PTHR13215:SF6	SUPFAM:SSF109715	SUPFAM:SSF54447
UniParc:UPI000295F233	RefSeq:XP_006343833.1	SEG:seg	InterPro:ssDNA-bd_transcriptional_reg	:	:

Description

RNA polymerase II transcriptional coactivator KELP [Source:PGSC_GENE;Acc:PGSC0003DMG400012264]

Coordinates

chr8:+:56184835..56188230

Molecular Weight (calculated)

19459.9 Da

IEP (calculated)

4.794

GRAVY (calculated)

-0.904

Length

170 amino acids

Sequence
(BLAST)

001: MDSETSIRIE ETVLDILKTC NLEEVSEQKI RRMASEKLGL DLSEPTRKKF VRQVVEKFLA EEQAKREANA ADEVKEEEDE EEEDGKVKSS GDKEYDDEGD
101: LIVCRLSHKR RVTVTDFRGK TLVSIREYYS KEGKELPTSK GISLTAEQWA TFKKNIPGVE QAIKKLESKS

Best Arabidopsis Sequence Match ( AT4G10920.2 )
(BLAST)

001: MEKETKEKIE KTVIEILSES DMKEITEFKV RKLASEKLAI DLSEKSHKAF VRSVVEKFLD EERAREYENS QVNKEEEDGD KDCGKGNKEF DDDGDLIICR
101: LSDKRRVTIQ EFKGKSLVSI REYYKKDGKE LPTSKGISLT DEQWSTFKKN MPAIENAVKK MESRV

Arabidopsis Description

KELPUncharacterized protein At4g10920 [Source:UniProtKB/TrEMBL;Acc:Q0WP62]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.