Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G253600.1 | Wheat | nucleus | 97.37 | 96.86 |
| TraesCS3B01G284700.1 | Wheat | nucleus | 96.84 | 96.34 |
| TraesCS3B01G288800.1 | Wheat | nucleus | 95.26 | 95.26 |
| Os01t0706000-01 | Rice | nucleus | 64.74 | 66.85 |
| KXG33215 | Sorghum | nucleus | 56.84 | 59.02 |
| CDY05125 | Canola | nucleus | 47.89 | 56.88 |
| Bra000728.1-P | Field mustard | nucleus | 48.42 | 56.44 |
| CDX90784 | Canola | nucleus | 48.95 | 56.36 |
| AT4G10920.2 | Thale cress | nucleus | 47.37 | 54.55 |
| GSMUA_Achr8P05370_001 | Banana | nucleus | 46.84 | 52.35 |
| PGSC0003DMT400031971 | Potato | nucleus | 46.84 | 52.35 |
| Solyc08g082580.2.1 | Tomato | nucleus | 47.37 | 51.43 |
| Zm00001d011680_P002 | Maize | cytosol | 55.79 | 50.72 |
| KRH60062 | Soybean | nucleus | 44.21 | 50.6 |
| VIT_02s0025g01700.t01 | Wine grape | nucleus | 48.95 | 49.73 |
| HORVU3Hr1G066410.6 | Barley | cytosol | 48.42 | 48.68 |
| KRH41342 | Soybean | nucleus | 45.79 | 43.72 |
| TraesCS5A01G299800.1 | Wheat | mitochondrion | 17.37 | 31.73 |
| Zm00001d043705_P005 | Maize | nucleus | 53.16 | 25.19 |
| KRH68921 | Soybean | nucleus | 42.11 | 14.34 |
| KRG97195 | Soybean | endoplasmic reticulum, golgi, vacuole | 38.95 | 13.5 |
| Bra037396.1-P | Field mustard | nucleus | 25.26 | 10.34 |
| CDY48492 | Canola | nucleus | 25.26 | 10.3 |
| CDY07161 | Canola | nucleus | 24.74 | 10.15 |
| AT4G00980.1 | Thale cress | nucleus | 24.74 | 9.63 |
Protein Annotations
| Gene3D:2.30.31.10 | MapMan:35.1 | ncoils:Coil | InterPro:DEK_C | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003713 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR009044 | InterPro:KELP | InterPro:PC4 |
| PFAM:PF02229 | PFAM:PF08766 | PIRSF:PIRSF038156 | PANTHER:PTHR13215 | PANTHER:PTHR13215:SF6 | SUPFAM:SSF54447 |
| EnsemblPlantsGene:TraesCS3A01G256000 | EnsemblPlants:TraesCS3A01G256000.1 | SEG:seg | InterPro:ssDNA-bd_transcriptional_reg | : | : |
Description
No Description!
Coordinates
chr3A:-:477708997..477711211
Molecular Weight (calculated)
21885.4 Da
IEP (calculated)
4.430
GRAVY (calculated)
-1.172
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEKTQDKVE AAVLEILRGS NVESLTEYKV RTAAADRLGI DLDLPLHKRF VRRLVEDYLK SLAEEEDEKQ KGGSRKEGKK KQQRQEEEEQ EEDEEKEGEE
101: EEEEEDKGGE GKKEFDDNGD LILCRLSKSR RVTLQEFKGK TLVSIREYYF KDGKELPTSK GMSMTVEQWE TFSKSVPAIE DAIKTLGESD
101: EEEEEDKGGE GKKEFDDNGD LILCRLSKSR RVTLQEFKGK TLVSIREYYF KDGKELPTSK GMSMTVEQWE TFSKSVPAIE DAIKTLGESD
001: MEKETKEKIE KTVIEILSES DMKEITEFKV RKLASEKLAI DLSEKSHKAF VRSVVEKFLD EERAREYENS QVNKEEEDGD KDCGKGNKEF DDDGDLIICR
101: LSDKRRVTIQ EFKGKSLVSI REYYKKDGKE LPTSKGISLT DEQWSTFKKN MPAIENAVKK MESRV
101: LSDKRRVTIQ EFKGKSLVSI REYYKKDGKE LPTSKGISLT DEQWSTFKKN MPAIENAVKK MESRV
Arabidopsis Description
KELPUncharacterized protein At4g10920 [Source:UniProtKB/TrEMBL;Acc:Q0WP62]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.