Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037396.1-P | Field mustard | nucleus | 64.55 | 67.89 |
| CDY48492 | Canola | nucleus | 64.55 | 67.6 |
| CDY07161 | Canola | nucleus | 63.11 | 66.52 |
| AT4G10920.2 | Thale cress | nucleus | 12.5 | 36.97 |
| KRG97195 | Soybean | endoplasmic reticulum, golgi, vacuole | 35.66 | 31.75 |
| KRH68921 | Soybean | nucleus | 35.45 | 31.0 |
| Os01t0706000-01 | Rice | nucleus | 10.66 | 28.26 |
| GSMUA_Achr8P05370_001 | Banana | nucleus | 9.22 | 26.47 |
| TraesCS3B01G284700.1 | Wheat | nucleus | 10.04 | 25.65 |
| TraesCS3B01G288800.1 | Wheat | nucleus | 9.84 | 25.26 |
| KXG33215 | Sorghum | nucleus | 9.43 | 25.14 |
| TraesCS3A01G256000.1 | Wheat | nucleus | 9.63 | 24.74 |
| TraesCS3D01G253600.1 | Wheat | nucleus | 9.63 | 24.61 |
| Zm00001d011680_P002 | Maize | cytosol | 9.63 | 22.49 |
| HORVU3Hr1G066410.6 | Barley | cytosol | 7.17 | 18.52 |
| AT5G09250.4 | Thale cress | nucleus | 4.1 | 16.81 |
| AT5G09240.2 | Thale cress | nucleus | 3.69 | 13.04 |
| Zm00001d043705_P005 | Maize | nucleus | 10.66 | 12.97 |
Protein Annotations
| MapMan:35.1 | EntrezGene:827935 | ProteinID:AEE81963.1 | EMBL:AK117983 | ArrayExpress:AT4G00980 | EnsemblPlantsGene:AT4G00980 |
| RefSeq:AT4G00980 | TAIR:AT4G00980 | RefSeq:AT4G00980-TAIR-G | EnsemblPlants:AT4G00980.1 | TAIR:AT4G00980.1 | Unigene:At.34490 |
| EMBL:BT005886 | InterPro:DEK_C | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015074 | InterPro:IPR001878 | RefSeq:NP_567205.2 | PFAM:PF08766 |
| PFAM:PF14223 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009046 |
| PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0025022 | PFscan:PS50158 | PANTHER:PTHR11439 |
| PANTHER:PTHR11439:SF227 | UniProt:Q8GXX5 | UniParc:UPI0000060D8E | InterPro:Znf_CCHC | : | : |
Description
At4g00980 [Source:UniProtKB/TrEMBL;Acc:Q8GXX5]
Coordinates
chr4:-:422478..424588
Molecular Weight (calculated)
55066.2 Da
IEP (calculated)
7.966
GRAVY (calculated)
-0.602
Length
488 amino acids
Sequence
(BLAST)
(BLAST)
001: MENSLLDSGE TMEIVATQKI EETVKSILSE SDMDQMTEFK LRLDASAKLG IDLSGTNHKK LVRDVLEVFL LSTPGEALVP ETVAPAKNET VSVAAASVGG
101: EDERFICKLS EKQNATVQRY RGQPFLSIGS QEHGKAFRGA HLSTNQWSVI KKNFAAIEDG IKQCQSKLKS EAARNGDTSE AVDKDSSHGF SVIKISRFDG
201: KSYLYWASQM ELFLKQLKLT YVLSEPCPSI GSSQGPETNP REITRADATG KKWLRDDYLC YTHLMNSLSD HLYRRYSQKF KHAKELWDEL KWVYQCDESK
301: SKRSQVRKYI EFRMVEERPI LEQVQVFNKI ADSIVSAGMF LDEAFHVSTI ISKFPPSWRG FCTRLMEEEY LPVWMLMERV KAEEELLRNG AKGVTYRPAT
401: GSSQMERTPS LGTTHRGSQS VGWKRKEPER DERVIIVCDN CGRKGHLAKH CWGSKSDERA SGKSNRINSS VAAPVESETQ ATTNNDRG
101: EDERFICKLS EKQNATVQRY RGQPFLSIGS QEHGKAFRGA HLSTNQWSVI KKNFAAIEDG IKQCQSKLKS EAARNGDTSE AVDKDSSHGF SVIKISRFDG
201: KSYLYWASQM ELFLKQLKLT YVLSEPCPSI GSSQGPETNP REITRADATG KKWLRDDYLC YTHLMNSLSD HLYRRYSQKF KHAKELWDEL KWVYQCDESK
301: SKRSQVRKYI EFRMVEERPI LEQVQVFNKI ADSIVSAGMF LDEAFHVSTI ISKFPPSWRG FCTRLMEEEY LPVWMLMERV KAEEELLRNG AKGVTYRPAT
401: GSSQMERTPS LGTTHRGSQS VGWKRKEPER DERVIIVCDN CGRKGHLAKH CWGSKSDERA SGKSNRINSS VAAPVESETQ ATTNNDRG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.