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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
  • cytosol 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY48492 Canola nucleus 93.52 92.92
Bra037396.1-P Field mustard nucleus 92.66 92.46
AT4G00980.1 Thale cress nucleus 66.52 63.11
CDY05125 Canola nucleus 12.74 36.88
CDX90784 Canola nucleus 12.96 36.36
KRH68921 Soybean nucleus 36.93 30.65
KRG97195 Soybean endoplasmic reticulum, golgi, vacuole 35.64 30.11
Os01t0706000-01 Rice nucleus 11.66 29.35
GSMUA_Achr8P05370_001 Banana nucleus 9.72 26.47
KXG33215 Sorghum nucleus 10.37 26.23
TraesCS3B01G284700.1 Wheat nucleus 10.58 25.65
TraesCS3B01G288800.1 Wheat nucleus 10.37 25.26
TraesCS3D01G253600.1 Wheat nucleus 10.37 25.13
Zm00001d011680_P002 Maize cytosol 11.23 24.88
TraesCS3A01G256000.1 Wheat nucleus 10.15 24.74
CDY40729 Canola nucleus 5.4 23.36
CDY44791 Canola nucleus 4.97 21.5
CDX69917 Canola nucleus 4.97 21.5
CDY21570 Canola nucleus 4.97 21.5
HORVU3Hr1G066410.6 Barley cytosol 7.34 17.99
Zm00001d043705_P005 Maize nucleus 10.58 12.22
Protein Annotations
Gene3D:2.30.31.10MapMan:35.1GO:A0A078F1A0EnsemblPlants:CDY07161ProteinID:CDY07161ProteinID:CDY07161.1
ncoils:CoilInterPro:DEK_CGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003713
GO:GO:0005488GO:GO:0006139GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0008270
GO:GO:0009058GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00123519001InterPro:IPR001878InterPro:IPR009044InterPro:PC4
PFAM:PF02229PFAM:PF08766PFAM:PF14223PFscan:PS50158PANTHER:PTHR11439PANTHER:PTHR11439:SF227
SUPFAM:SSF54447UniParc:UPI0004EE7E58InterPro:Znf_CCHCSEG:segInterPro:ssDNA-bd_transcriptional_reg:
Description
BnaCnng01760D
Coordinates
chrLK031975:-:622511..624306
Molecular Weight (calculated)
52873.6 Da
IEP (calculated)
8.379
GRAVY (calculated)
-0.682
Length
463 amino acids
Sequence
(BLAST)
001: MEMVPPLTTQ KRIEETVKGI LREADMDLMT EFKLRISASS ILGFDLSGAN HKKLIRDVLE AFLLSNPPDE DTIAPVDPNP PPTATASAGS GEDERFICKL
101: SEKRNATVQK YRGQPFLSIG ESSKEDGKPF RGVHLSANQW SVIKKNFSAI EEAIKQSESK LKSESKQNGD TSNTSFSFSI IETSRFDGRS YLRWASQMEL
201: FLKQLNLSYV LSNHCPVVTN TSQPDSAGKN WLKDDYLCYT HLLNSLSDHL HRQYSKRFKH AKELWEELKW VYQCEESNSK RSQVRKYIEF QMVEERPVLD
301: QVQDFNKIAD SIVSAGMFLD ETFHVSTIIS KFPPSWRGFS TRLMEEEFLP VWMLMERVKA EEEEVLRNGP QRLTYRPATR SCQMERMPPS IGRGWKRKEP
401: ERDGRVSIVC DNCGRRGHLA KNCWGKTLEE RASGKPNRVS FSSTSPVGSE TQATTKNDSR TIS
Best Arabidopsis Sequence Match ( AT4G00980.1 )
(BLAST)
001: MENSLLDSGE TMEIVATQKI EETVKSILSE SDMDQMTEFK LRLDASAKLG IDLSGTNHKK LVRDVLEVFL LSTPGEALVP ETVAPAKNET VSVAAASVGG
101: EDERFICKLS EKQNATVQRY RGQPFLSIGS QEHGKAFRGA HLSTNQWSVI KKNFAAIEDG IKQCQSKLKS EAARNGDTSE AVDKDSSHGF SVIKISRFDG
201: KSYLYWASQM ELFLKQLKLT YVLSEPCPSI GSSQGPETNP REITRADATG KKWLRDDYLC YTHLMNSLSD HLYRRYSQKF KHAKELWDEL KWVYQCDESK
301: SKRSQVRKYI EFRMVEERPI LEQVQVFNKI ADSIVSAGMF LDEAFHVSTI ISKFPPSWRG FCTRLMEEEY LPVWMLMERV KAEEELLRNG AKGVTYRPAT
401: GSSQMERTPS LGTTHRGSQS VGWKRKEPER DERVIIVCDN CGRKGHLAKH CWGSKSDERA SGKSNRINSS VAAPVESETQ ATTNNDRG
Arabidopsis Description
At4g00980 [Source:UniProtKB/TrEMBL;Acc:Q8GXX5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.