Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY48492 | Canola | nucleus | 93.52 | 92.92 |
Bra037396.1-P | Field mustard | nucleus | 92.66 | 92.46 |
AT4G00980.1 | Thale cress | nucleus | 66.52 | 63.11 |
CDY05125 | Canola | nucleus | 12.74 | 36.88 |
CDX90784 | Canola | nucleus | 12.96 | 36.36 |
KRH68921 | Soybean | nucleus | 36.93 | 30.65 |
KRG97195 | Soybean | endoplasmic reticulum, golgi, vacuole | 35.64 | 30.11 |
Os01t0706000-01 | Rice | nucleus | 11.66 | 29.35 |
GSMUA_Achr8P05370_001 | Banana | nucleus | 9.72 | 26.47 |
KXG33215 | Sorghum | nucleus | 10.37 | 26.23 |
TraesCS3B01G284700.1 | Wheat | nucleus | 10.58 | 25.65 |
TraesCS3B01G288800.1 | Wheat | nucleus | 10.37 | 25.26 |
TraesCS3D01G253600.1 | Wheat | nucleus | 10.37 | 25.13 |
Zm00001d011680_P002 | Maize | cytosol | 11.23 | 24.88 |
TraesCS3A01G256000.1 | Wheat | nucleus | 10.15 | 24.74 |
CDY40729 | Canola | nucleus | 5.4 | 23.36 |
CDY44791 | Canola | nucleus | 4.97 | 21.5 |
CDX69917 | Canola | nucleus | 4.97 | 21.5 |
CDY21570 | Canola | nucleus | 4.97 | 21.5 |
HORVU3Hr1G066410.6 | Barley | cytosol | 7.34 | 17.99 |
Zm00001d043705_P005 | Maize | nucleus | 10.58 | 12.22 |
Protein Annotations
Gene3D:2.30.31.10 | MapMan:35.1 | GO:A0A078F1A0 | EnsemblPlants:CDY07161 | ProteinID:CDY07161 | ProteinID:CDY07161.1 |
ncoils:Coil | InterPro:DEK_C | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003713 |
GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00123519001 | InterPro:IPR001878 | InterPro:IPR009044 | InterPro:PC4 |
PFAM:PF02229 | PFAM:PF08766 | PFAM:PF14223 | PFscan:PS50158 | PANTHER:PTHR11439 | PANTHER:PTHR11439:SF227 |
SUPFAM:SSF54447 | UniParc:UPI0004EE7E58 | InterPro:Znf_CCHC | SEG:seg | InterPro:ssDNA-bd_transcriptional_reg | : |
Description
BnaCnng01760D
Coordinates
chrLK031975:-:622511..624306
Molecular Weight (calculated)
52873.6 Da
IEP (calculated)
8.379
GRAVY (calculated)
-0.682
Length
463 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMVPPLTTQ KRIEETVKGI LREADMDLMT EFKLRISASS ILGFDLSGAN HKKLIRDVLE AFLLSNPPDE DTIAPVDPNP PPTATASAGS GEDERFICKL
101: SEKRNATVQK YRGQPFLSIG ESSKEDGKPF RGVHLSANQW SVIKKNFSAI EEAIKQSESK LKSESKQNGD TSNTSFSFSI IETSRFDGRS YLRWASQMEL
201: FLKQLNLSYV LSNHCPVVTN TSQPDSAGKN WLKDDYLCYT HLLNSLSDHL HRQYSKRFKH AKELWEELKW VYQCEESNSK RSQVRKYIEF QMVEERPVLD
301: QVQDFNKIAD SIVSAGMFLD ETFHVSTIIS KFPPSWRGFS TRLMEEEFLP VWMLMERVKA EEEEVLRNGP QRLTYRPATR SCQMERMPPS IGRGWKRKEP
401: ERDGRVSIVC DNCGRRGHLA KNCWGKTLEE RASGKPNRVS FSSTSPVGSE TQATTKNDSR TIS
101: SEKRNATVQK YRGQPFLSIG ESSKEDGKPF RGVHLSANQW SVIKKNFSAI EEAIKQSESK LKSESKQNGD TSNTSFSFSI IETSRFDGRS YLRWASQMEL
201: FLKQLNLSYV LSNHCPVVTN TSQPDSAGKN WLKDDYLCYT HLLNSLSDHL HRQYSKRFKH AKELWEELKW VYQCEESNSK RSQVRKYIEF QMVEERPVLD
301: QVQDFNKIAD SIVSAGMFLD ETFHVSTIIS KFPPSWRGFS TRLMEEEFLP VWMLMERVKA EEEEVLRNGP QRLTYRPATR SCQMERMPPS IGRGWKRKEP
401: ERDGRVSIVC DNCGRRGHLA KNCWGKTLEE RASGKPNRVS FSSTSPVGSE TQATTKNDSR TIS
001: MENSLLDSGE TMEIVATQKI EETVKSILSE SDMDQMTEFK LRLDASAKLG IDLSGTNHKK LVRDVLEVFL LSTPGEALVP ETVAPAKNET VSVAAASVGG
101: EDERFICKLS EKQNATVQRY RGQPFLSIGS QEHGKAFRGA HLSTNQWSVI KKNFAAIEDG IKQCQSKLKS EAARNGDTSE AVDKDSSHGF SVIKISRFDG
201: KSYLYWASQM ELFLKQLKLT YVLSEPCPSI GSSQGPETNP REITRADATG KKWLRDDYLC YTHLMNSLSD HLYRRYSQKF KHAKELWDEL KWVYQCDESK
301: SKRSQVRKYI EFRMVEERPI LEQVQVFNKI ADSIVSAGMF LDEAFHVSTI ISKFPPSWRG FCTRLMEEEY LPVWMLMERV KAEEELLRNG AKGVTYRPAT
401: GSSQMERTPS LGTTHRGSQS VGWKRKEPER DERVIIVCDN CGRKGHLAKH CWGSKSDERA SGKSNRINSS VAAPVESETQ ATTNNDRG
101: EDERFICKLS EKQNATVQRY RGQPFLSIGS QEHGKAFRGA HLSTNQWSVI KKNFAAIEDG IKQCQSKLKS EAARNGDTSE AVDKDSSHGF SVIKISRFDG
201: KSYLYWASQM ELFLKQLKLT YVLSEPCPSI GSSQGPETNP REITRADATG KKWLRDDYLC YTHLMNSLSD HLYRRYSQKF KHAKELWDEL KWVYQCDESK
301: SKRSQVRKYI EFRMVEERPI LEQVQVFNKI ADSIVSAGMF LDEAFHVSTI ISKFPPSWRG FCTRLMEEEY LPVWMLMERV KAEEELLRNG AKGVTYRPAT
401: GSSQMERTPS LGTTHRGSQS VGWKRKEPER DERVIIVCDN CGRKGHLAKH CWGSKSDERA SGKSNRINSS VAAPVESETQ ATTNNDRG
Arabidopsis Description
At4g00980 [Source:UniProtKB/TrEMBL;Acc:Q8GXX5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.