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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70068
CDX70076
CDX75751
CDX77762
CDX78884
CDX81016
CDX87210
CDX89437
CDX89554
CDX92948
CDX98213
CDX98948
CDX98955
CDY02151
CDY02344
CDY03368
CDY06514
CDY09519
CDY11950
CDY12454
CDY20740
CDY24316
CDY25971
CDY32802
CDY33246
CDY34246
CDY36786
CDY38933
CDY39099
CDY39101
CDY41046
CDY46403
CDY48959
CDY52188
CDY55775
CDY62101
CDY64140
CDY64679
CDY65610

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G06430.1 CDY02344 AT1G30860.1 21798944
AT3G06430.1 CDY09519 AT1G30860.1 21798944
AT3G06430.1 CDY12454 AT1G30860.1 21798944
AT3G06430.1 CDY52188 AT1G30860.1 21798944
AT3G06430.1 CDX89554 AT2G23290.1 21798944
AT3G06430.1 CDY38933 AT2G23290.1 21798944
AT3G06430.1 CDX75751 AT3G14180.1 21798944
AT3G06430.1 CDY33246 AT3G14180.1 21798944
AT3G06430.1 CDY39099 AT3G14180.1 21798944
AT3G06430.1 CDY39101 AT3G14180.1 21798944
AT3G06430.1 CDX92948 AT3G22550.1 21798944
AT3G06430.1 CDX98213 AT3G22550.1 21798944
AT3G06430.1 CDY24316 AT3G22550.1 21798944
AT3G06430.1 CDY34246 AT3G22550.1 21798944
AT3G06430.1 CDY65610 AT3G22550.1 21798944
AT3G06430.1 CDX89437 AT4G25200.1 21798944
AT3G06430.1 CDY03368 AT4G25200.1 21798944
AT3G06430.1 CDX70076 AT5G06710.1 21798944
AT3G06430.1 CDX78884 AT5G06710.1 21798944
AT3G06430.1 CDX81016 AT5G06710.1 21798944
AT3G06430.1 CDX98948 AT5G06710.1 21798944
AT3G06430.1 CDY55775 AT5G06710.1 21798944
AT3G06430.1 CDX70068 AT5G06780.1 21798944
AT3G06430.1 CDX98955 AT5G06780.1 21798944
AT3G06430.1 CDY46403 AT5G41070.1 21798944
AT3G06430.1 CDY48959 AT5G41070.1 21798944
AT3G06430.1 CDX77762 AT5G47370.1 21798944
AT3G06430.1 CDY25971 AT5G47370.1 21798944
AT3G06430.1 CDY41046 AT5G47370.1 21798944
AT3G06430.1 CDY64679 AT5G47370.1 21798944
AT3G06430.1 CDY06514 AT5G56250.1 21798944
AT3G06430.1 CDY11950 AT5G56250.1 21798944
AT3G06430.1 CDY20740 AT5G56250.1 21798944
AT3G06430.1 CDY32802 AT5G56250.1 21798944
AT3G06430.1 CDY36786 AT5G56250.1 21798944
AT3G06430.1 CDY62101 AT5G56250.1 21798944
AT3G06430.1 CDX87210 AT5G61380.1 21798944
AT3G06430.1 CDY02151 AT5G61380.1 21798944
AT3G06430.1 CDY64140 AT5G61380.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY24692 Canola plastid 95.51 97.5
AT3G06430.1 Thale cress plastid 88.98 89.71
VIT_05s0020g00690.t01 Wine grape plastid 73.06 71.89
KRH02451 Soybean plastid 70.2 70.49
KRH02371 Soybean plastid 70.0 70.29
PGSC0003DMT400011734 Potato plastid 65.1 64.44
Solyc12g098990.1.1 Tomato plastid 64.69 64.04
PGSC0003DMT400022191 Potato plastid 63.67 62.28
GSMUA_Achr11P... Banana plastid 67.55 60.96
Solyc01g057200.2.1 Tomato plastid 58.37 60.85
Os03t0309800-02 Rice plastid 58.98 57.68
KRH37687 Soybean plastid 54.9 55.46
TraesCS4B01G138200.1 Wheat cytosol, mitochondrion, plastid 58.57 54.46
TraesCS4A01G178100.5 Wheat plastid 59.18 53.6
TraesCS4D01G132900.3 Wheat plastid 59.18 53.6
EER97871 Sorghum plastid 61.22 53.57
Zm00001d018693_P001 Maize plastid 59.8 51.31
HORVU4Hr1G024360.2 Barley endoplasmic reticulum, vacuole 58.57 49.65
CDX78150 Canola plastid 34.29 34.64
CDX86283 Canola plastid 35.31 34.06
CDX85360 Canola plastid 34.9 33.86
CDX73576 Canola plastid 33.88 33.27
CDY41990 Canola plastid 21.84 22.72
CDY42639 Canola plastid 21.84 22.15
CDX71198 Canola cytosol 19.39 16.78
CDY06027 Canola plastid 17.96 16.57
CDX71917 Canola plastid 17.55 15.78
CDY31666 Canola cytosol 18.37 14.45
CDY64953 Canola cytosol 8.57 14.43
CDX84260 Canola cytosol, nucleus, plastid 18.78 14.31
CDX98345 Canola cytosol 8.98 14.15
CDY31603 Canola plastid 18.57 13.73
CDY32056 Canola plastid 21.63 13.1
CDX71562 Canola mitochondrion, plastid 18.57 13.02
CDX74617 Canola mitochondrion 8.98 12.54
CDY29249 Canola plastid 19.8 11.87
CDY56509 Canola plastid 19.59 11.74
CDY15384 Canola cytosol 9.39 10.8
CDY23832 Canola plastid 17.55 10.51
CDX79920 Canola cytosol, plastid 17.14 10.28
CDY19091 Canola cytosol 14.9 10.01
CDX73117 Canola plastid 17.35 9.85
CDY45398 Canola plastid 17.35 9.84
CDY56616 Canola plastid 14.9 9.25
CDY10802 Canola plastid 15.71 9.07
CDY52317 Canola cytosol 0.0 0.0
Protein Annotations
EnsemblPlants:CDY05264EnsemblPlantsGene:GSBRNA2T00120087001Gene3D:1.25.40.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR002885InterPro:IPR011990InterPro:Pentatricopeptide_repeatInterPro:TPR-like_helical_dom_sfPANTHER:PTHR24015PANTHER:PTHR24015:SF301
PFAM:PF01535PFAM:PF13041PFscan:PS51375ProteinID:CDY05264ProteinID:CDY05264.1SEG:seg
TIGRFAMs:TIGR00756UniParc:UPI0004EE8C6AMapMan:35.1:::
Description
BnaC05g45390D
Coordinates
chrLK031960:-:691123..692701
Molecular Weight (calculated)
55997.4 Da
IEP (calculated)
6.668
GRAVY (calculated)
-0.409
Length
490 amino acids
Sequence
(BLAST)
001: MASMSLSFSS SLCSSRIPES KRRFHQREPI FARCVLAASK SSPGGGATAA TKKRLWKEGE FPGITEPANT RRAPMKNVKK KLDRRSKANG WACTVTETLS
101: DLIAKKQWLQ ALEVFEMLRE QPFYQPKEGT YMKLLVLLGK SGQPHRAQKV FDEMLEEGLE PTAELYTALL GAYCRSNLID SAFSVLERMK SLPQCQPDVY
201: TYSTLLKACV DASLFDLVES LYREMDERLI TPNTVTQNIV LSGYGRVGRF DQMEKVLSDM LVSTECKPDV WTMNIILSVF GNMGKIDMME SWYEKFRNFG
301: IEPETRSFNI LIGAYGKKRM YDKMSSVMEY MRKLEFPWTT STYNNIIEAF ADVGDAKNME YTFDQMRSEG MKADTKTFCC LINGYANAGL FHKVISSVQL
401: AAKFEIPENT SFYNAVISAC AKADDLIEME RVYTRMKERE CVRDSRTFEI MAEAYEKEGM NDKIYYLEQE RQQVMDHHAA ATKEEENLPG
Best Arabidopsis Sequence Match ( AT3G06430.1 )
(BLAST)
001: MASMSLSFSS SLCSSRIPEG KRRFRHRDVG IVRCVLAASK SSPGSVTKKR LWKDGEFPGI TEPVNQRRTP IKNVKKKLDR RSKANGWVNT VTETLSDLIA
101: KKQWLQALEV FDMLREQTFY QPKEGTYMKL LVLLGKSGQP NRAQKLFDEM LEEGLEPTVE LYTALLAAYT RSNLIDDAFS ILDKMKSFPQ CQPDVFTYST
201: LLKACVDASQ FDLVDSLYKE MDERLITPNT VTQNIVLSGY GRVGRFDQME KVLSDMLVST ACKPDVWTMN IILSVFGNMG KIDMMESWYE KFRNFGIEPE
301: TRTFNILIGS YGKKRMYDKM SSVMEYMRKL EFPWTTSTYN NIIEAFADVG DAKNMELTFD QMRSEGMKAD TKTFCCLING YANAGLFHKV ISSVQLAAKF
401: EIPENTAFYN AVISACAKAD DLIEMERVYI RMKERQCVCD SRTFEIMVEA YEKEGMNDKI YYLEQERQKL MDRTVATKEM ENLPAG
Arabidopsis Description
EMB2750Pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQU6]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.