CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45398	Canola	plastid	96.87	96.76
AT1G74850.1	Thale cress	plastid	93.16	93.27
VIT_17s0000g07500.t01	Wine grape	plastid	72.31	71.81
KRH03384	Soybean	nucleus	69.52	69.85
KRH56998	Soybean	nucleus	69.06	69.46
PGSC0003DMT400063174	Potato	plastid	67.9	68.14
Solyc03g113630.2.1	Tomato	nucleus	67.32	67.56
GSMUA_Achr1P18290_001	Banana	cytosol	48.44	62.95
HORVU5Hr1G114630.1	Barley	mitochondrion	49.94	51.74
Os03t0824100-01	Rice	plastid	51.33	51.04
TraesCS5A01G486300.1	Wheat	plastid	50.52	50.17
TraesCS5D01G500300.1	Wheat	plastid	50.29	49.89
TraesCS5B01G500100.1	Wheat	plastid	50.29	49.37
OQU90703	Sorghum	plastid	50.75	48.83
Zm00001d022599_P002	Maize	plastid	50.29	48.55
CDX71198	Canola	cytosol	15.41	23.5
CDY19091	Canola	cytosol	19.7	23.32
CDY32056	Canola	plastid	20.51	21.88
CDY10802	Canola	plastid	20.63	20.97
CDY15384	Canola	cytosol	10.2	20.66
CDY64953	Canola	cytosol	6.95	20.62
CDY56509	Canola	plastid	19.47	20.54
CDY56616	Canola	plastid	18.77	20.53
CDX86283	Canola	plastid	11.94	20.28
CDX85360	Canola	plastid	11.82	20.2
CDY29249	Canola	plastid	19.12	20.2
CDY41990	Canola	plastid	11.01	20.17
CDY42639	Canola	plastid	11.12	19.88
CDY23832	Canola	plastid	18.66	19.68
CDY31603	Canola	plastid	15.06	19.61
CDX78150	Canola	plastid	11.01	19.59
CDX79920	Canola	cytosol, plastid	18.42	19.46
CDX71562	Canola	mitochondrion, plastid	15.41	19.03
CDY31666	Canola	cytosol	13.67	18.94
CDX73576	Canola	plastid	10.89	18.84
CDY06027	Canola	plastid	11.59	18.83
CDX71917	Canola	plastid	11.7	18.53
CDX74617	Canola	mitochondrion	7.53	18.52
CDX84260	Canola	cytosol, nucleus, plastid	13.56	18.2
CDY24692	Canola	plastid	9.97	17.92
CDY05264	Canola	plastid	9.85	17.35
CDX98345	Canola	cytosol	6.03	16.72
CDY52317	Canola	cytosol	0.23	11.76

Protein Annotations

Gene3D:1.25.40.10	MapMan:15.6.1.2.2.2	EnsemblPlants:CDX73117	ProteinID:CDX73117	ProteinID:CDX73117.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00103587001	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF726	InterPro:Pentatricopeptide_repeat	SMART:SM00463	InterPro:Smr_dom	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0004EB396E	:	:	:	:	:

Description

BnaC06g35650D

Coordinates

chrLK031797:-:2198441..2201852

Molecular Weight (calculated)

96190.7 Da

IEP (calculated)

5.442

GRAVY (calculated)

-0.260

Length

863 amino acids

Sequence
(BLAST)

001: MNLAIPNPNS HHLSFLIQNP TFTGNRRFSS NPNRLSFLSA AKKPSSVAKI NAKTKDLVLG NPSVSVEKGK YSYDVESLIN KLSSLPPRGS IARCLDIFKN
101: KLSLNDFALV FKEFAGRGDW QRSLRLFKYM QRQIWCKPNE HIYTIMISLL GREGLLDKCL EVFDEMPSQG VARSVFSYTA LINAYGRNGR YETSLELLER
201: MKSEKISPSI LTYNTVINAC ARGGLDWEGL LGLFAEMRHE GIQPDIVTYN TLLGACAIRG LGDESEMVFR TMNDGGIVPD LTTYSHLVET FGKLGRLEKV
301: SDLLSEMASG GSLPDITSYN VLLEAYAKSG SIKEAMGVFH QMQAAGCTPN ANTYSVLLNL FGQSGRYDDV RQLFLEMKSS NTDPDAATYN ILIDVFGEGG
401: YFKEVVTLFH DMVEENIEPD METYEGIIFA CGKGGLHEDA RKILQYMTAK DVVPSSKAYT GVIEAFGQVA LYEEAIVAFN TMHEVGSNPS IETFHSLLYS
501: FARGGLFKES EVILSRLVDS GIPRNRDTFN ATIEAYKQGG KFEEAVKTYV DMEKSRCDPD ERTLEAVLNV YSCARLVDEC REQFEEMKAS DILPSIMCYC
601: MMLSVYGKTE RWDDANELLE EMLSNRVSNI HQVIGQMIKG DYDDDSNWQI VEYVLDKLSS EGCGLGIRFY NALLDALWWL GQKERAARVL NEATKRGIFP
701: ELFRRNKLVW SVDVHRMSEG GMYTALSVWL NDLSDMLVKG QDLPQLAVVV SVRGQLEKSS AARESPITKA AFSFLQDNVS SSFSFTGWNG GRIMCQRSQL
801: KQLLSTQEPT SEESQKSNLV ALTNSPIFSA GTRTSTSSDT NQSGGNSSPR RTKMKKELAG SPA

Best Arabidopsis Sequence Match ( AT1G74850.1 )
(BLAST)

001: MNLAIPNPNS HHLSFLIQNS SFIGNRRFAD GNRLRFLSGG NRKPCSFSGK IKAKTKDLVL GNPSVSVEKG KYSYDVESLI NKLSSLPPRG SIARCLDIFK
101: NKLSLNDFAL VFKEFAGRGD WQRSLRLFKY MQRQIWCKPN EHIYTIMISL LGREGLLDKC LEVFDEMPSQ GVSRSVFSYT ALINAYGRNG RYETSLELLD
201: RMKNEKISPS ILTYNTVINA CARGGLDWEG LLGLFAEMRH EGIQPDIVTY NTLLSACAIR GLGDEAEMVF RTMNDGGIVP DLTTYSHLVE TFGKLRRLEK
301: VCDLLGEMAS GGSLPDITSY NVLLEAYAKS GSIKEAMGVF HQMQAAGCTP NANTYSVLLN LFGQSGRYDD VRQLFLEMKS SNTDPDAATY NILIEVFGEG
401: GYFKEVVTLF HDMVEENIEP DMETYEGIIF ACGKGGLHED ARKILQYMTA NDIVPSSKAY TGVIEAFGQA ALYEEALVAF NTMHEVGSNP SIETFHSLLY
501: SFARGGLVKE SEAILSRLVD SGIPRNRDTF NAQIEAYKQG GKFEEAVKTY VDMEKSRCDP DERTLEAVLS VYSFARLVDE CREQFEEMKA SDILPSIMCY
601: CMMLAVYGKT ERWDDVNELL EEMLSNRVSN IHQVIGQMIK GDYDDDSNWQ IVEYVLDKLN SEGCGLGIRF YNALLDALWW LGQKERAARV LNEATKRGLF
701: PELFRKNKLV WSVDVHRMSE GGMYTALSVW LNDINDMLLK GDLPQLAVVV SVRGQLEKSS AARESPIAKA AFSFLQDHVS SSFSFTGWNG GRIMCQRSQL
801: KQLLSTKEPT SEESENKNLV ALANSPIFAA GTRASTSSDT NHSGNPTQRR TRTKKELAGS TA

Arabidopsis Description

PTAC2PTAC2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNJ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.