CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71917	Canola	plastid	94.73	92.29
AT3G59040.2	Thale cress	endoplasmic reticulum	90.21	81.19
VIT_12s0028g01140.t01	Wine grape	cytosol	67.23	65.15
PGSC0003DMT400041148	Potato	plastid	69.87	64.86
CDX98345	Canola	cytosol	37.85	64.63
Solyc07g043600.2.1	Tomato	nucleus	70.24	64.31
KRH36131	Soybean	plastid	66.86	64.2
KRG90623	Soybean	nucleus	67.42	63.7
Os08t0191900-01	Rice	plastid	64.03	55.83
EES13486	Sorghum	plastid	63.28	55.81
TraesCS3A01G523700.1	Wheat	plastid	63.84	55.76
Zm00001d024248_P001	Maize	plastid	62.52	55.33
TraesCS3D01G529200.1	Wheat	plastid	63.47	55.16
TraesCSU01G054500.1	Wheat	cytosol, plastid	63.28	54.99
HORVU3Hr1G114340.4	Barley	mitochondrion	63.09	52.84
GSMUA_Achr8P07220_001	Banana	cytosol	66.67	32.54
CDX78150	Canola	plastid	17.14	18.76
CDY24692	Canola	plastid	16.38	18.12
CDX73576	Canola	plastid	16.95	18.04
CDX71198	Canola	cytosol	19.21	18.02
CDY05264	Canola	plastid	16.57	17.96
CDX85360	Canola	plastid	16.38	17.23
CDY31666	Canola	cytosol	20.15	17.18
CDX84260	Canola	cytosol, nucleus, plastid	20.34	16.8
CDX86283	Canola	plastid	16.01	16.73
CDY64953	Canola	cytosol	8.85	16.15
CDY31603	Canola	plastid	19.4	15.54
CDY32056	Canola	plastid	22.6	14.83
CDX71562	Canola	mitochondrion, plastid	19.21	14.59
CDX74617	Canola	mitochondrion	9.42	14.24
CDY41990	Canola	plastid	12.43	14.01
CDY42639	Canola	plastid	12.43	13.66
CDY56509	Canola	plastid	19.96	12.96
CDY19091	Canola	cytosol	17.7	12.89
CDY29249	Canola	plastid	19.77	12.85
CDX73117	Canola	plastid	18.83	11.59
CDY15384	Canola	cytosol	9.23	11.5
CDY45398	Canola	plastid	18.64	11.46
CDY10802	Canola	plastid	18.27	11.43
CDY56616	Canola	plastid	16.57	11.15
CDY23832	Canola	plastid	16.57	10.76
CDX79920	Canola	cytosol, plastid	16.2	10.53
CDY52317	Canola	cytosol	0.19	5.88

Protein Annotations

EnsemblPlants:CDY06027	EnsemblPlantsGene:GSBRNA2T00121873001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF722
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	ProteinID:CDY06027	ProteinID:CDY06027.1
SEG:seg	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI0004EE5B6E	MapMan:16.12.4.6	:

Description

BnaA09g37530D

Coordinates

chrLK031967:+:294140..297119

Molecular Weight (calculated)

60457.9 Da

IEP (calculated)

8.872

GRAVY (calculated)

-0.365

Length

531 amino acids

Sequence
(BLAST)

001: MSQTVIFKPF VSVPSSNHRE RKLQNNSINV GVKIQNRFRV VCMGMLAPRK FLQKRRKVEV FKDAADEVDQ KRWRGLMLEI ESAGSAVSVL RQYRTDGDQG
101: LPRDLVLGTL VRFKQLKKWN LVSEILEWLR YQNWWNFSEM DFLMLITAYG KLGNFNGAER VLSVLSKMGS SPNVISYTAL MESYGRGGKC NNAEAIFRRM
201: QSSGPEPSAV TYQIILKTFV EGNKFKEAEE VFETLLDEKI SPLKPDQKMY HMMIYMYKKA GNYEKARKVF ASMTEKGVPQ STVTYNSLMS FETNYKEVSK
301: IYDQMQRSGI QPDVVSYALL IKAYGRARRE EEALSVFEEM LDAGVRPTHK AYNILLDAFA ISGMVEQAKT VFKSMRRDRF YPDLCSYTTM LSAYVNASDM
401: EGAEKFFKRI KVDGFEPNIV TYGTMIKGYA KADDLDKVME VYEKMRLSGI KANQTILTTI MDASGRCNDF GSALSWYKEM ESCGVPPDQK AKNVLLSLAS
501: SQDELEEAKE VTAQEGSLAY VGSQTEELVE L

Best Arabidopsis Sequence Match ( AT3G59040.1 )
(BLAST)

001: MSQAVIFKPF VSVPSSNHSQ RKLQNNIINV GVKIQNRFRV VCMGMLAPRK FLQKRRKMEV FKDAADETDQ KRWRGLMLEI ESTGSAVPVL RQYKTDGDQG
101: LPRDLVLGTL VRFKQLKKWN LVSEILEWLR YQNWWNFSEI DFLMLITAYG KLGNFNGAER VLSVLSKMGS TPNVISYTAL MESYGRGGKC NNAEAIFRRM
201: QSSGPEPSAI TYQIILKTFV EGDKFKEAEE VFETLLDEKK SPLKPDQKMY HMMIYMYKKA GNYEKARKVF SSMVGKGVPQ STVTYNSLMS FETSYKEVSK
301: IYDQMQRSDI QPDVVSYALL IKAYGRARRE EEALSVFEEM LDAGVRPTHK AYNILLDAFA ISGMVEQAKT VFKSMRRDRI FPDLWSYTTM LSAYVNASDM
401: EGAEKFFKRI KVDGFEPNIV TYGTLIKGYA KANDVEKMME VYEKMRLSGI KANQTILTTI MDASGRCKNF GSALGWYKEM ESCGVPPDQK AKNVLLSLAS
501: TQDELEEAKE LTGIRNETAT IIARVYGSDD DEEGVEDISS ESSDDEDEGD DDDDDARETV LYDKPQEGSL GYGSLQTEEL VGL

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J741]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.