CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79920	Canola	cytosol, plastid	95.84	95.96
AT2G41720.1	Thale cress	cytosol, plastid	87.78	87.35
VIT_08s0007g08590.t01	Wine grape	cytosol	65.28	62.68
KRH66918	Soybean	cytosol	63.2	61.77
Solyc04g015950.1.1	Tomato	plastid	61.49	59.18
Os07t0213300-01	Rice	cytosol	47.92	57.9
GSMUA_Achr7P21150_001	Banana	cytosol, plastid	55.26	53.94
HORVU2Hr1G056820.1	Barley	plastid	53.67	53.6
KXG36530	Sorghum	plastid	53.42	53.36
KRG95241	Soybean	plastid	44.38	53.3
TraesCS2B01G269700.1	Wheat	plastid	53.06	53.19
TraesCS2D01G244500.3	Wheat	plastid	53.3	52.03
Zm00001d021871_P002	Maize	plastid	51.1	51.93
TraesCS2A01G239500.2	Wheat	plastid	52.69	50.47
CDX71198	Canola	cytosol	14.55	21.02
CDY64953	Canola	cytosol	7.21	20.27
CDX74617	Canola	mitochondrion	8.68	20.23
CDY31603	Canola	plastid	16.26	20.06
CDY19091	Canola	cytosol	17.85	20.03
CDY32056	Canola	plastid	19.07	19.28
CDY10802	Canola	plastid	19.93	19.2
CDX71562	Canola	mitochondrion, plastid	16.38	19.17
CDY45398	Canola	plastid	20.05	18.98
CDY56616	Canola	plastid	18.09	18.76
CDX73117	Canola	plastid	19.68	18.66
CDY56509	Canola	plastid	18.58	18.58
CDY29249	Canola	plastid	18.46	18.48
CDY42639	Canola	plastid	10.88	18.43
CDY41990	Canola	plastid	10.51	18.26
CDY24692	Canola	plastid	10.39	17.71
CDY15384	Canola	cytosol	9.17	17.61
CDY05264	Canola	plastid	10.51	17.55
CDX78150	Canola	plastid	10.02	16.91
CDY31666	Canola	cytosol	12.71	16.69
CDX84260	Canola	cytosol, nucleus, plastid	13.08	16.64
CDY06027	Canola	plastid	10.76	16.57
CDX71917	Canola	plastid	10.76	16.15
CDX85360	Canola	plastid	9.9	16.04
CDX73576	Canola	plastid	9.78	16.03
CDX86283	Canola	plastid	9.9	15.94
CDX98345	Canola	cytosol	5.13	13.5
CDY52317	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078GFC6	EnsemblPlants:CDY23832	ProteinID:CDY23832	ProteinID:CDY23832.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00024247001	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1614
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EE19FF	:

Description

BnaC04g02050DBnaC04g02050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFC6]

Coordinates

chrLK032150:+:51225..54675

Molecular Weight (calculated)

91771.9 Da

IEP (calculated)

9.226

GRAVY (calculated)

-0.233

Length

818 amino acids

Sequence
(BLAST)

001: MATVTHLVSP PESSRAYRPR AAAKTSDALR EKKSVYVNYD RGEHEVSVRV TGFRKADIAR RYRVRVENDR FQKDWSVSEV ADRLIALNRW EEVDGVLNSW
101: VGRFARKNFP ILIGELGRRG CIDLCVNVFN WMKNQKNYCA RNDIYNTMIR LHARCNRVDQ ARGLFFEMQK WSCKPDAETY NALINAHGRA GQWRWAMNLM
201: DDMLRAAIAP SRTTYNNLIN ACGSSGNWRE ALEVCKKMTD NGVGPDLVTH NIVLSAYKSG RQFSKALSYF ELMKGAKVRP DTTTFNIVIY CLSKLGQTSQ
301: ALDVFNSMRE KKRAECRPDV VTFTSVMHLY SVRGEVESCR AVFEAMVAEG LKPNIVSYNA LMGAYAVHGM SENALSVFQE IKRNGMVPDV VSYTCLLNSY
401: GRSGQPGKAR EVFLMMRKER RKPNVVTYNA LIDAYGSNGL LPEAVGVFRQ MEQDGVKPNV VSVSTLLAAC SRSGKKVNVE TVLSAAETRG IKLNTAAYNS
501: AIGSFINGAE LEKAVALYRT MSRKKVKADS VTFTVLISGS CRMSKYPEAV SYLKDMEELG VPMTKEVYSS VLCAYSKQAS GQVTEAESIF KQMKKDGCKP
601: DVIAYTSMLH AYNASEKWEK ACELFLEMEE NGVEPDSIAC SALMRAFNKG GQPSNVFILM DLMREKEVPF TGAVFFEIFS ACNTLQEWKR AIDLIQMMEP
701: YLPSLSIGLT NQMLHLFGKS GKVEAMMKLF YKLIASGVGI NLETYSVLLE HLLAVGNWRK YIEVLEWMSD GGIQPSTQMY RDIISFGERS AGIEFEPLIR
801: QKLASLRNKG GGDLSKAH

Best Arabidopsis Sequence Match ( AT2G41720.1 )
(BLAST)

001: MATVTNFKLV TPPESSRADK PGATKASDAF QEKKSVSVNY DRGEHEVSVN IGGLRKADIP RRYRIRVEND RFQKDWSVSE VVDRLMALNR WEEVDGVLNS
101: WVGRFARKNF PVLIRELSRR GCIELCVNVF KWMKIQKNYC ARNDIYNMMI RLHARHNWVD QARGLFFEMQ KWSCKPDAET YDALINAHGR AGQWRWAMNL
201: MDDMLRAAIA PSRSTYNNLI NACGSSGNWR EALEVCKKMT DNGVGPDLVT HNIVLSAYKS GRQYSKALSY FELMKGAKVR PDTTTFNIII YCLSKLGQSS
301: QALDLFNSMR EKRAECRPDV VTFTSIMHLY SVKGEIENCR AVFEAMVAEG LKPNIVSYNA LMGAYAVHGM SGTALSVLGD IKQNGIIPDV VSYTCLLNSY
401: GRSRQPGKAK EVFLMMRKER RKPNVVTYNA LIDAYGSNGF LAEAVEIFRQ MEQDGIKPNV VSVCTLLAAC SRSKKKVNVD TVLSAAQSRG INLNTAAYNS
501: AIGSYINAAE LEKAIALYQS MRKKKVKADS VTFTILISGS CRMSKYPEAI SYLKEMEDLS IPLTKEVYSS VLCAYSKQGQ VTEAESIFNQ MKMAGCEPDV
601: IAYTSMLHAY NASEKWGKAC ELFLEMEANG IEPDSIACSA LMRAFNKGGQ PSNVFVLMDL MREKEIPFTG AVFFEIFSAC NTLQEWKRAI DLIQMMDPYL
701: PSLSIGLTNQ MLHLFGKSGK VEAMMKLFYK IIASGVGINL KTYAILLEHL LAVGNWRKYI EVLEWMSGAG IQPSNQMYRD IISFGERSAG IEFEPLIRQK
801: LESLRNKGEG LIPTFRHEGT LL

Arabidopsis Description

EMB2654EMB2654 [Source:UniProtKB/TrEMBL;Acc:A0A178VXZ9]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.