Factsheet for Solyc04g015950.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g08590.t01	Wine grape	cytosol	66.71	66.55
KRH66918	Soybean	cytosol	62.94	63.92
AT2G41720.1	Thale cress	cytosol, plastid	59.65	61.68
Bra004642.1-P	Field mustard	cytosol, plastid	59.18	61.49
CDY23832	Canola	plastid	59.18	61.49
CDX79920	Canola	cytosol, plastid	59.06	61.44
Os07t0213300-01	Rice	cytosol	47.29	59.38
KRG95241	Soybean	plastid	45.65	56.98
GSMUA_Achr7P21150_001	Banana	cytosol, plastid	54.94	55.73
KXG36530	Sorghum	plastid	53.29	55.31
HORVU2Hr1G056820.1	Barley	plastid	53.18	55.19
TraesCS2B01G269700.1	Wheat	plastid	52.59	54.78
Zm00001d021871_P002	Maize	plastid	51.29	54.16
TraesCS2D01G244500.3	Wheat	plastid	52.82	53.58
TraesCS2A01G239500.2	Wheat	plastid	52.24	51.99
Solyc06g009520.2.1	Tomato	nucleus, plastid	19.18	19.38
Solyc01g107320.2.1	Tomato	plastid	18.35	19.05
Solyc07g017760.1.1	Tomato	plastid	18.82	19.0
Solyc08g045780.2.1	Tomato	cytosol	10.24	18.91
Solyc03g113630.2.1	Tomato	nucleus	18.71	18.49
Solyc01g006500.2.1	Tomato	plastid	10.35	18.03
Solyc07g043600.2.1	Tomato	nucleus	12.12	17.76
Solyc08g045850.2.1	Tomato	nucleus	14.59	17.74
Solyc04g054270.2.1	Tomato	plastid	9.76	17.36
Solyc10g080330.1.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, nucleus	7.29	16.27
Solyc02g068760.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	11.29	15.41
Solyc01g057200.2.1	Tomato	plastid	8.47	15.32
Solyc12g098990.1.1	Tomato	plastid	8.82	15.15

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	UniProt:K4BQ96	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1614	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	EnsemblPlantsGene:Solyc04g015950.1
EnsemblPlants:Solyc04g015950.1.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002766DAA	SEG:seg	:

Description

Pentatricopeptide repeat-containing protein At2g41720 [Source:Projected from Arabidopsis thaliana (AT2G41720) UniProtKB/Swiss-Prot;Acc:Q8RWS8]

Coordinates

chr4:+:6487752..6499059

Molecular Weight (calculated)

96827.4 Da

IEP (calculated)

9.013

GRAVY (calculated)

-0.265

Length

850 amino acids

Sequence
(BLAST)

001: MATIQNPHIS TFPQHPNPKF KTHFRASIIV SQKQQKPKND NKAAYEEKKK ASVDYDKGIH KVTVRIDGFR KSDLPKHQRL RVEGDRFQKD WGVSEVVEKI
101: MKINHWDDIE GVLNCWAGRF ARKNFPILIK EITETGLIEH SIHVFNWMKN QKNYCARSDI YNMMIRLHAR HNRVDQARGL FFEMQKWRCQ PNVETYNALI
201: SAHGRASQWR WAKNIMEDML RASVCIYSSL LQYLCILIKI PPNRSTYNNL INACGSSGNW REALKVCKEM TENGVGPDLM THNIVLSAYK NGTQYAKALS
301: YFELMKGTKV RPDTTTLNIV IHCLVKLEQY QKAVEIFNSM REKRSECIPD VVTYTTIMHM YSVSGQIKNC EAVFNTMLAE GLKPNIVSYN TLVGAYASHG
401: MAQEALSIFD KMKSNGTRPD VVSYTSLLNA YGRSEQPERA METFERMKRN NLKPNLVSYN VLIDAYGSNG LLDKAVQVLR EMEHDGLQPN VVTISTLLAA
501: SSRCCQKVNI DSILTAAKMR GIELNTVAYN SALGSYLNAG EYEKALSLYK LMRKKKVMPD SVTYNVLISG CCRMSNYSEA LEFLDEMIAL KIPLTKEVCS
601: SAICAYTKQG QLAKSESMFS MMKMEGFQPD VIAYTTMLNA YSVGENWEKA FAVFQEMELN GVLPDAIACS ALMRSFNRGC QPDKVLLVAD FMRERNIPFT
701: EAVLFELVSA SSILRDWRMI TEIITTMEAS LPYVSIGMLN QLLHSIGKSG KTETMIKFFY MVVTSGTEVN LTTYSVLLKN LLAAGNWRKY IEVLEWMEDG
801: RLQPSSNMYD DILFFAQRSG GTENAAVIKQ RVESLRKKFG HETTNELLWR

Best Arabidopsis Sequence Match ( AT2G41720.1 )
(BLAST)

001: MATVTNFKLV TPPESSRADK PGATKASDAF QEKKSVSVNY DRGEHEVSVN IGGLRKADIP RRYRIRVEND RFQKDWSVSE VVDRLMALNR WEEVDGVLNS
101: WVGRFARKNF PVLIRELSRR GCIELCVNVF KWMKIQKNYC ARNDIYNMMI RLHARHNWVD QARGLFFEMQ KWSCKPDAET YDALINAHGR AGQWRWAMNL
201: MDDMLRAAIA PSRSTYNNLI NACGSSGNWR EALEVCKKMT DNGVGPDLVT HNIVLSAYKS GRQYSKALSY FELMKGAKVR PDTTTFNIII YCLSKLGQSS
301: QALDLFNSMR EKRAECRPDV VTFTSIMHLY SVKGEIENCR AVFEAMVAEG LKPNIVSYNA LMGAYAVHGM SGTALSVLGD IKQNGIIPDV VSYTCLLNSY
401: GRSRQPGKAK EVFLMMRKER RKPNVVTYNA LIDAYGSNGF LAEAVEIFRQ MEQDGIKPNV VSVCTLLAAC SRSKKKVNVD TVLSAAQSRG INLNTAAYNS
501: AIGSYINAAE LEKAIALYQS MRKKKVKADS VTFTILISGS CRMSKYPEAI SYLKEMEDLS IPLTKEVYSS VLCAYSKQGQ VTEAESIFNQ MKMAGCEPDV
601: IAYTSMLHAY NASEKWGKAC ELFLEMEANG IEPDSIACSA LMRAFNKGGQ PSNVFVLMDL MREKEIPFTG AVFFEIFSAC NTLQEWKRAI DLIQMMDPYL
701: PSLSIGLTNQ MLHLFGKSGK VEAMMKLFYK IIASGVGINL KTYAILLEHL LAVGNWRKYI EVLEWMSGAG IQPSNQMYRD IISFGERSAG IEFEPLIRQK
801: LESLRNKGEG LIPTFRHEGT LL

Arabidopsis Description

EMB2654EMB2654 [Source:UniProtKB/TrEMBL;Acc:A0A178VXZ9]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.