Factsheet for Solyc08g045850.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
cytosol 1
nucleus 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030453	Potato	mitochondrion	96.42	96.7
VIT_18s0122g01380.t01	Wine grape	cytosol, mitochondrion, plastid	74.11	74.53
KRH51622	Soybean	cytosol, plastid	69.24	69.54
CDY31603	Canola	plastid	65.24	68.78
AT5G42310.1	Thale cress	plastid	68.38	67.42
KRH60945	Soybean	plastid	65.52	67.16
Bra017881.1-P	Field mustard	plastid	67.1	67.0
CDX71562	Canola	mitochondrion, plastid	66.81	66.81
GSMUA_Achr9P12090_001	Banana	mitochondrion	58.66	59.59
TraesCS2B01G238300.1	Wheat	plastid	50.79	53.06
EER99505	Sorghum	plastid	50.5	52.84
HORVU2Hr1G043170.1	Barley	mitochondrion	49.93	52.8
Zm00001d021716_P001	Maize	plastid	49.79	52.1
Os07t0548300-01	Rice	plastid	45.49	49.3
Solyc10g080330.1.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, nucleus	19.89	36.48
Solyc08g045780.2.1	Tomato	cytosol	13.88	21.09
Solyc01g006500.2.1	Tomato	plastid	14.02	20.08
Solyc04g054270.2.1	Tomato	plastid	13.59	19.87
Solyc07g017760.1.1	Tomato	plastid	22.46	18.65
Solyc01g057200.2.1	Tomato	plastid	12.02	17.87
Solyc01g107320.2.1	Tomato	plastid	20.6	17.58
Solyc12g098990.1.1	Tomato	plastid	12.3	17.37
Solyc07g043600.2.1	Tomato	nucleus	14.31	17.24
Solyc02g068760.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	14.88	16.69
Solyc06g009520.2.1	Tomato	nucleus, plastid	19.17	15.93
Solyc03g113630.2.1	Tomato	nucleus	18.31	14.88
Solyc04g015950.1.1	Tomato	plastid	17.74	14.59

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.12.4.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003727
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009658
GO:GO:0009987	GO:GO:0010239	GO:GO:0016020	GO:GO:0016043	GO:GO:0016787	GO:GO:0042644
GO:GO:0042651	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4CKD9
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF788
InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:Solyc08g045850.2	EnsemblPlants:Solyc08g045850.2.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000276C653
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:16144745..16149105

Molecular Weight (calculated)

79208.8 Da

IEP (calculated)

5.838

GRAVY (calculated)

-0.313

Length

699 amino acids

Sequence
(BLAST)

001: MVGLSVPSTF TGTCWRRRRR MNTLLLPPPS QLPYQFHPRR QILGQHSSTS HLSISNQFNI SIEEEEEEED DDVGSYSNQR YDFTRLLQFL STTEPNSDNS
101: SPTQLDPTEL RLAESYRAVP APLWHSLLKD LSSTPSSISI AYALVIWLQK HNLCYSYELL YSILIHALGR SEKLYEAFLL SQRQTLTPLT YNALIGACAR
201: NGDLEKALNL MCRMRRDGYQ SDYVNYSLII QSLIRSNSID LTMLHKFCYE IEADMIELDG QLLNDMIVGF AKAGDVDTAL GFMSVVQGNG LSPKIATVVN
301: LISELGNSGR TDEAEAIFEE LKEGGLKPRT RAFNSLLKGY VKTGSLKDAE YIVSEMERSG VAPDEHTYSL LIDAYGNAGR WESARIVLKE MEANNVQPNS
401: FVFSRILASY RDRGEWQRSF QVLKEMKNSG VNPDRQFYNI MIDTFGKYNC LDHAMSTFER MKLEEIEPDT VTWNTLIDCH SKHGHHNKAE ELFEVMQESG
501: CSPCTTTYNI MINSFGELEK WEEVKGLLSK MQSQGLLPNV VTYTTLINIY GQSGRFNDAI ECLEVMKSAG LKPSSTMYNA LINAYAQRGL SEQAVNAFRI
601: MKGDGLKPSL LALNSLINAF GEDRRDAEAF AVLKYMKEND MKPDVVTYTT LMKTLIRVEK FERVPAVYEE MLLSGCIPDR KARAMLRSAL RYMKSTLKL

Best Arabidopsis Sequence Match ( AT5G42310.1 )
(BLAST)

001: MLLLQQPPLV STRFHSLYFL THHHHHHHRF FQPPISAFSA TTSASLPSPS PSSSSSYFSS WNGLDTNEEE DNEFSSEVHR RYDFSPLLKF LSRFGPVELA
101: LDSESESEAS PESLNPVEFD LVESYRAVPA PYWHSLIKSL TSSTSSLGLA YAVVSWLQKH NLCFSYELLY SILIHALGRS EKLYEAFLLS QKQTLTPLTY
201: NALIGACARN NDIEKALNLI AKMRQDGYQS DFVNYSLVIQ SLTRSNKIDS VMLLRLYKEI ERDKLELDVQ LVNDIIMGFA KSGDPSKALQ LLGMAQATGL
301: SAKTATLVSI ISALADSGRT LEAEALFEEL RQSGIKPRTR AYNALLKGYV KTGPLKDAES MVSEMEKRGV SPDEHTYSLL IDAYVNAGRW ESARIVLKEM
401: EAGDVQPNSF VFSRLLAGFR DRGEWQKTFQ VLKEMKSIGV KPDRQFYNVV IDTFGKFNCL DHAMTTFDRM LSEGIEPDRV TWNTLIDCHC KHGRHIVAEE
501: MFEAMERRGC LPCATTYNIM INSYGDQERW DDMKRLLGKM KSQGILPNVV THTTLVDVYG KSGRFNDAIE CLEEMKSVGL KPSSTMYNAL INAYAQRGLS
601: EQAVNAFRVM TSDGLKPSLL ALNSLINAFG EDRRDAEAFA VLQYMKENGV KPDVVTYTTL MKALIRVDKF QKVPVVYEEM IMSGCKPDRK ARSMLRSALR
701: YMKQTLRAS

Arabidopsis Description

CRP1Pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L844]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.