CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021716_P001	Maize	plastid	96.86	96.86
TraesCS2B01G238300.1	Wheat	plastid	92.07	91.93
HORVU2Hr1G043170.1	Barley	mitochondrion	90.57	91.53
Os07t0548300-01	Rice	plastid	82.93	85.89
GSMUA_Achr9P12090_001	Banana	mitochondrion	64.22	62.35
VIT_18s0122g01380.t01	Wine grape	cytosol, mitochondrion, plastid	55.39	53.24
CDY31603	Canola	plastid	51.95	52.34
KRH51622	Soybean	cytosol, plastid	53.59	51.44
AT5G42310.1	Thale cress	plastid	54.19	51.06
CDX71562	Canola	mitochondrion, plastid	53.29	50.93
PGSC0003DMT400030453	Potato	mitochondrion	52.99	50.79
Bra017881.1-P	Field mustard	plastid	53.14	50.71
Solyc08g045850.2.1	Tomato	nucleus	52.84	50.5
KRH60945	Soybean	plastid	51.2	50.15
OQU77078	Sorghum	mitochondrion	26.95	36.44
KXG20531	Sorghum	plastid	24.7	21.26
OQU86802	Sorghum	cytosol	9.73	21.04
KXG40345	Sorghum	plastid	14.37	19.75
OQU84443	Sorghum	cytosol	16.77	18.51
EER87934	Sorghum	plastid	13.47	18.29
EES13486	Sorghum	plastid	16.02	17.77
KXG36606	Sorghum	plastid	20.51	17.72
EER97871	Sorghum	plastid	14.67	17.5
KXG30749	Sorghum	plastid	13.02	17.47
KXG36530	Sorghum	plastid	18.41	15.02
OQU90703	Sorghum	plastid	19.16	14.27
EES16159	Sorghum	plastid	17.81	13.65

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.12.4.2	EntrezGene:8081724	UniProt:C5XAV5	EnsemblPlants:EER99505	ProteinID:EER99505
ProteinID:EER99505.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003727	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009658	GO:GO:0009987
GO:GO:0010239	GO:GO:0016020	GO:GO:0016043	GO:GO:0016787	GO:GO:0042644	GO:GO:0042651
GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041
PFAM:PF13812	PFAM:PF17177	InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF788
InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3002G331800	SUPFAM:SSF48452	unigene:Sbi.2104	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0001A841A9	RefSeq:XP_002462984.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:70034301..70037837

Molecular Weight (calculated)

73344.6 Da

IEP (calculated)

6.468

GRAVY (calculated)

0.012

Length

668 amino acids

Sequence
(BLAST)

001: MPASLLPSTF LPHRLRRLAP AGCTTSPTAS SSASVPASRY DFEPLLAYLS SPSVAASLTS PSPPASVPAP EHRLAATYSA VPSHEWHALL RDLAASDASL
101: PVAFALLPFL HRHRLCFPLD LLLSSLLHSL SVSGRLLPHS LLLSFPPSLS DPPSPLLLNS LLAASAAASR PAVALRLLSL LREHDFLPDL ASYSHLLASL
201: LNTRDPPDAA LLERLLGDLR ESRLEPDAPL FSDLISAFAR AALPDAALEL LASAQAIGLT PRSNAVTALI SALGSAGRVA EAEALFLEFF LAGEIKPRTR
301: AYNALLKGYV RIGSLKNAEQ VLDEMSQCGV APDEATYSLL VDAYTRAGRW ESARILLKEM EADGVKPSSY VFSRILAGFR DRGDWQKAFA VLREMQASGV
401: RPDRHFYNVM IDTFGKYNCL GHAMDAFDRM REEEIEPDVV TWNTLIDAHC KGGRHDRAME LFEEMRESNC PPGTTTYNIM INLLGEQERW EGVEAMLSEM
501: KEQGLVPNII TYTTLVDVYG RSGRYKEAID CIEAMKADGL KPSPTMYHAL VNAYAQRGLA DHALNVVKAM KADGLEVSIL VLNSLINAFG EDRRVVEAFS
601: VLQFMKENGL RPDVITYTTL MKALIRVEQF DKVPVIYEEM ITSGCAPDRK ARAMLRSALR YMKHMRVA

Best Arabidopsis Sequence Match ( AT5G42310.1 )
(BLAST)

001: MLLLQQPPLV STRFHSLYFL THHHHHHHRF FQPPISAFSA TTSASLPSPS PSSSSSYFSS WNGLDTNEEE DNEFSSEVHR RYDFSPLLKF LSRFGPVELA
101: LDSESESEAS PESLNPVEFD LVESYRAVPA PYWHSLIKSL TSSTSSLGLA YAVVSWLQKH NLCFSYELLY SILIHALGRS EKLYEAFLLS QKQTLTPLTY
201: NALIGACARN NDIEKALNLI AKMRQDGYQS DFVNYSLVIQ SLTRSNKIDS VMLLRLYKEI ERDKLELDVQ LVNDIIMGFA KSGDPSKALQ LLGMAQATGL
301: SAKTATLVSI ISALADSGRT LEAEALFEEL RQSGIKPRTR AYNALLKGYV KTGPLKDAES MVSEMEKRGV SPDEHTYSLL IDAYVNAGRW ESARIVLKEM
401: EAGDVQPNSF VFSRLLAGFR DRGEWQKTFQ VLKEMKSIGV KPDRQFYNVV IDTFGKFNCL DHAMTTFDRM LSEGIEPDRV TWNTLIDCHC KHGRHIVAEE
501: MFEAMERRGC LPCATTYNIM INSYGDQERW DDMKRLLGKM KSQGILPNVV THTTLVDVYG KSGRFNDAIE CLEEMKSVGL KPSSTMYNAL INAYAQRGLS
601: EQAVNAFRVM TSDGLKPSLL ALNSLINAFG EDRRDAEAFA VLQYMKENGV KPDVVTYTTL MKALIRVDKF QKVPVVYEEM IMSGCKPDRK ARSMLRSALR
701: YMKQTLRAS

Arabidopsis Description

CRP1Pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L844]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.