CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036698_P001	Maize	plastid	92.65	91.48
Os05t0275000-01	Rice	cytosol, plastid	88.66	86.76
TraesCS7A01G495500.1	Wheat	plastid	83.89	80.27
TraesCS7D01G482800.1	Wheat	plastid	84.02	80.1
TraesCS7B01G401800.2	Wheat	plastid	83.12	79.14
HORVU7Hr1G111000.5	Barley	plastid	71.52	68.01
GSMUA_Achr2P04910_001	Banana	plastid	59.79	55.7
VIT_11s0052g00600.t01	Wine grape	plastid	56.44	53.35
CDY29249	Canola	plastid	53.74	51.04
Bra024454.1-P	Field mustard	plastid	53.48	50.8
KRH12254	Soybean	plastid	54.25	50.78
CDY56509	Canola	plastid	53.48	50.73
AT2G18940.1	Thale cress	plastid	53.48	50.49
KRH37281	Soybean	plastid	53.61	50.12
Solyc07g017760.1.1	Tomato	plastid	53.61	49.41
PGSC0003DMT400010473	Potato	plastid	53.35	49.17
KXG36606	Sorghum	plastid	34.92	35.06
EER99505	Sorghum	plastid	21.26	24.7
KXG40345	Sorghum	plastid	14.43	23.05
OQU86802	Sorghum	cytosol	8.51	21.36
EER87934	Sorghum	plastid	13.53	21.34
OQU77078	Sorghum	mitochondrion	13.14	20.65
KXG36530	Sorghum	plastid	21.78	20.63
KXG30749	Sorghum	plastid	12.63	19.68
OQU84443	Sorghum	cytosol	14.43	18.51
OQU90703	Sorghum	plastid	21.26	18.39
EER97871	Sorghum	plastid	13.14	18.21
EES16159	Sorghum	plastid	19.33	17.2
EES13486	Sorghum	plastid	12.89	16.61

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.12.4.3	UniProt:A0A194YLR2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KXG20531
ProteinID:KXG20531	ProteinID:KXG20531.2	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF343	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3010G215500	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0009DC873A	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:55836741..55840286

Molecular Weight (calculated)

85141.8 Da

IEP (calculated)

7.827

GRAVY (calculated)

-0.097

Length

776 amino acids

Sequence
(BLAST)

001: MEATGRGLFP NKPTLPAGPR KRGPLIPAAP PPPSPSSLPL DSLLLHLTAA PAPAPAPRRS HPTPTPPHSF LSPAAQALVL AISSHPLPTL PAFLASRRDE
101: LLPADIPSLL KALELSGHWE WALALLRWAG AEGAADASAL EMVVRALGRE GQHDAVCALL DEMPLPPGSR LDVRAYTTVL HALSRAGRYE RAGVAPTLVT
201: YNVVLDVYGR MGRSWPRIVA LLDEMRAAGV EPDDFTASTV IAACCRDGLV DEAVAFFEDL KARGHTPCVV TYNALLQVFG KAGNYTEALR VLKEMEQDGC
301: QPDAVTYNEL AGTYARAGFY EEAAKCLDTM TSKGLLPNAF TYNTVMTAYG NIGKVDEALA LFDQMKKSGC VPNVNTYNFI LGMLGKKSRF TVMLEMLGEM
401: SRSGCTPNRV TWNTMLAVCG KRGMEDYVTR VLEGMKSCGV ELSRDTYNTL IAAYGRCGSR TNAFKMYNEM TSAGFAPCLT TYNALLNVLS RQGDWSTAQS
501: IVSKMRTKGF KPNDQSYSLL LQCYAKGGNI AGIDAIEKEV YGGTVFPSWV ILRTLVIANF KCRRLGGIEK AFQEVKARGY NPDLVIFNSM LSMYAKNGMY
601: SKVTEIFDSI KQSGLSPDLI TYNSLMDMYA KCSESWEAEK ILNQLKSSQV KPDVVSYNTV INGFCKQGLI KEAQRILSEM IADGMAPCVV TYHTLVGGYA
701: SLEMFSEARE VINYMIQHNL KPMELTYRRV VDSYCKAKRF EEARSFLSEV SETDPNFDKK VLHTLAAYIE DAQFGR

Best Arabidopsis Sequence Match ( AT2G18940.1 )
(BLAST)

001: MDGALFPHKP PYPIQSKRPP PSQSSNQSIK FSSATLHLPP PSPPSFPLDS LLHHLVHLSS PPPRHSNSAA ARFPSLEVST DSSSSKPILG IEIENERNGS
101: LKLLCKKEVV LVNSIVEQPL TGLSRFFDSV KSELLRTDLV SLVKGLDDSG HWERAVFLFE WLVLSSNSGA LKLDHQVIEI FVRILGRESQ YSVAAKLLDK
201: IPLQEYLLDV RAYTTILHAY SRTGKYEKAI DLFERMKEMG PSPTLVTYNV ILDVFGKMGR SWRKILGVLD EMRSKGLKFD EFTCSTVLSA CAREGLLREA
301: KEFFAELKSC GYEPGTVTYN ALLQVFGKAG VYTEALSVLK EMEENSCPAD SVTYNELVAA YVRAGFSKEA AGVIEMMTKK GVMPNAITYT TVIDAYGKAG
401: KEDEALKLFY SMKEAGCVPN TCTYNAVLSL LGKKSRSNEM IKMLCDMKSN GCSPNRATWN TMLALCGNKG MDKFVNRVFR EMKSCGFEPD RDTFNTLISA
501: YGRCGSEVDA SKMYGEMTRA GFNACVTTYN ALLNALARKG DWRSGENVIS DMKSKGFKPT ETSYSLMLQC YAKGGNYLGI ERIENRIKEG QIFPSWMLLR
601: TLLLANFKCR ALAGSERAFT LFKKHGYKPD MVIFNSMLSI FTRNNMYDQA EGILESIRED GLSPDLVTYN SLMDMYVRRG ECWKAEEILK TLEKSQLKPD
701: LVSYNTVIKG FCRRGLMQEA VRMLSEMTER GIRPCIFTYN TFVSGYTAMG MFAEIEDVIE CMAKNDCRPN ELTFKMVVDG YCRAGKYSEA MDFVSKIKTF
801: DPCFDDQSIQ RLALRVRENL ES

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64624]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.