Factsheet for Zm00001d036698_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG20531	Sorghum	plastid	91.48	92.65
Os05t0275000-01	Rice	cytosol, plastid	85.24	84.49
TraesCS7A01G495500.1	Wheat	plastid	82.06	79.53
TraesCS7D01G482800.1	Wheat	plastid	82.19	79.36
TraesCS7B01G401800.2	Wheat	plastid	81.17	78.28
HORVU7Hr1G111000.5	Barley	plastid	70.36	67.77
GSMUA_Achr2P04910_001	Banana	plastid	57.89	54.62
VIT_11s0052g00600.t01	Wine grape	plastid	55.98	53.59
Bra024454.1-P	Field mustard	plastid	53.18	51.16
CDY29249	Canola	plastid	53.18	51.16
CDY56509	Canola	plastid	52.93	50.86
AT2G18940.1	Thale cress	plastid	53.05	50.73
KRH12254	Soybean	plastid	53.05	50.3
KRH37281	Soybean	plastid	52.42	49.64
Solyc07g017760.1.1	Tomato	plastid	52.93	49.41
PGSC0003DMT400010473	Potato	plastid	52.42	48.93
Zm00001d022003_P001	Maize	plastid	33.59	33.21
Zm00001d021716_P001	Maize	plastid	21.25	25.0
Zm00001d027349_P001	Maize	plastid	14.12	22.89
Zm00001d037476_P001	Maize	plastid	13.61	21.75
Zm00001d052240_P001	Maize	plastid	13.74	21.64
Zm00001d021871_P002	Maize	plastid	20.99	20.5
Zm00001d015377_P003	Maize	plastid	15.27	20.1
Zm00001d018693_P001	Maize	plastid	14.25	19.61
Zm00001d014751_P003	Maize	plastid	13.1	19.36
Zm00001d022599_P002	Maize	plastid	21.25	18.68
Zm00001d030624_P001	Maize	plastid	18.58	16.78
Zm00001d024248_P001	Maize	plastid	12.6	16.5

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100302579	MapMan:16.12.4.3	PDB:4M57	PDB:4M59	PDB:4OE1
ProteinID:AQK81740.1	UniProt:B8Y6I0	EMBL:BT063468	EMBL:FJ490677	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	GO:GO:0042802	InterPro:IPR002885
InterPro:IPR011990	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF343	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI00018960F9	EnsemblPlantsGene:Zm00001d036698	EnsemblPlants:Zm00001d036698_P001	EnsemblPlants:Zm00001d036698_T001	SEG:seg	:

Description

luteus15 luteus15

Coordinates

chr6:-:98069169..98071529

Molecular Weight (calculated)

86229.0 Da

IEP (calculated)

7.683

GRAVY (calculated)

-0.099

Length

786 amino acids

Sequence
(BLAST)

001: MEATGRGLFP NKPTLPAGPR KRGPLLPAAP PPPSPSSLPL DSLLLHLTAP APAPAPAPRR SHQTPTPPHS FLSPDAQVLV LAISSHPLPT LAAFLASRRD
101: ELLRADITSL LKALELSGHW EWALALLRWA GKEGAADASA LEMVVRALGR EGQHDAVCAL LDETPLPPGS RLDVRAYTTV LHALSRAGRY ERALELFAEL
201: RRQGVAPTLV TYNVVLDVYG RMGRSWPRIV ALLDEMRAAG VEPDGFTAST VIAACCRDGL VDEAVAFFED LKARGHAPCV VTYNALLQVF GKAGNYTEAL
301: RVLGEMEQNG CQPDAVTYNE LAGTYARAGF FEEAARCLDT MASKGLLPNA FTYNTVMTAY GNVGKVDEAL ALFDQMKKTG FVPNVNTYNL VLGMLGKKSR
401: FTVMLEMLGE MSRSGCTPNR VTWNTMLAVC GKRGMEDYVT RVLEGMRSCG VELSRDTYNT LIAAYGRCGS RTNAFKMYNE MTSAGFTPCI TTYNALLNVL
501: SRQGDWSTAQ SIVSKMRTKG FKPNEQSYSL LLQCYAKGGN VAGIAAIENE VYGSGAVFPS WVILRTLVIA NFKCRRLDGM ETAFQEVKAR GYNPDLVIFN
601: SMLSIYAKNG MYSKATEVFD SIKRSGLSPD LITYNSLMDM YAKCSESWEA EKILNQLKCS QTMKPDVVSY NTVINGFCKQ GLVKEAQRVL SEMVADGMAP
701: CAVTYHTLVG GYSSLEMFSE AREVIGYMVQ HGLKPMELTY RRVVESYCRA KRFEEARGFL SEVSETDLDF DKKALEAYIE DAQFGR

Best Arabidopsis Sequence Match ( AT2G18940.1 )
(BLAST)

001: MDGALFPHKP PYPIQSKRPP PSQSSNQSIK FSSATLHLPP PSPPSFPLDS LLHHLVHLSS PPPRHSNSAA ARFPSLEVST DSSSSKPILG IEIENERNGS
101: LKLLCKKEVV LVNSIVEQPL TGLSRFFDSV KSELLRTDLV SLVKGLDDSG HWERAVFLFE WLVLSSNSGA LKLDHQVIEI FVRILGRESQ YSVAAKLLDK
201: IPLQEYLLDV RAYTTILHAY SRTGKYEKAI DLFERMKEMG PSPTLVTYNV ILDVFGKMGR SWRKILGVLD EMRSKGLKFD EFTCSTVLSA CAREGLLREA
301: KEFFAELKSC GYEPGTVTYN ALLQVFGKAG VYTEALSVLK EMEENSCPAD SVTYNELVAA YVRAGFSKEA AGVIEMMTKK GVMPNAITYT TVIDAYGKAG
401: KEDEALKLFY SMKEAGCVPN TCTYNAVLSL LGKKSRSNEM IKMLCDMKSN GCSPNRATWN TMLALCGNKG MDKFVNRVFR EMKSCGFEPD RDTFNTLISA
501: YGRCGSEVDA SKMYGEMTRA GFNACVTTYN ALLNALARKG DWRSGENVIS DMKSKGFKPT ETSYSLMLQC YAKGGNYLGI ERIENRIKEG QIFPSWMLLR
601: TLLLANFKCR ALAGSERAFT LFKKHGYKPD MVIFNSMLSI FTRNNMYDQA EGILESIRED GLSPDLVTYN SLMDMYVRRG ECWKAEEILK TLEKSQLKPD
701: LVSYNTVIKG FCRRGLMQEA VRMLSEMTER GIRPCIFTYN TFVSGYTAMG MFAEIEDVIE CMAKNDCRPN ELTFKMVVDG YCRAGKYSEA MDFVSKIKTF
801: DPCFDDQSIQ RLALRVRENL ES

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64624]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.