Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G495500.1 | Wheat | plastid | 97.18 | 97.66 |
| TraesCS7D01G482800.1 | Wheat | plastid | 97.06 | 97.17 |
| KXG20531 | Sorghum | plastid | 79.14 | 83.12 |
| Zm00001d036698_P001 | Maize | plastid | 78.28 | 81.17 |
| Os05t0275000-01 | Rice | cytosol, plastid | 78.77 | 80.96 |
| HORVU7Hr1G111000.5 | Barley | plastid | 80.49 | 80.39 |
| GSMUA_Achr2P04910_001 | Banana | plastid | 54.72 | 53.54 |
| VIT_11s0052g00600.t01 | Wine grape | plastid | 51.9 | 51.52 |
| CDY29249 | Canola | plastid | 50.43 | 50.31 |
| AT2G18940.1 | Thale cress | plastid | 50.55 | 50.12 |
| Bra024454.1-P | Field mustard | plastid | 50.18 | 50.06 |
| CDY56509 | Canola | plastid | 49.94 | 49.76 |
| KRH12254 | Soybean | plastid | 49.33 | 48.49 |
| Solyc07g017760.1.1 | Tomato | plastid | 50.06 | 48.46 |
| KRH37281 | Soybean | plastid | 49.08 | 48.19 |
| PGSC0003DMT400010473 | Potato | plastid | 49.57 | 47.98 |
| TraesCS2B01G212000.1 | Wheat | plastid | 31.53 | 32.33 |
| TraesCS2B01G238300.1 | Wheat | plastid | 20.98 | 25.56 |
| TraesCS7B01G033900.1 | Wheat | plastid | 14.11 | 22.68 |
| TraesCS7B01G307500.2 | Wheat | cytosol | 13.87 | 21.77 |
| TraesCS2B01G269700.1 | Wheat | plastid | 21.1 | 21.08 |
| TraesCS4B01G138200.1 | Wheat | cytosol, mitochondrion, plastid | 12.76 | 19.73 |
| TraesCS5B01G500100.1 | Wheat | plastid | 20.49 | 19.0 |
| TraesCS4B01G359900.1 | Wheat | plastid | 11.53 | 18.69 |
| TraesCS6B01G332800.1 | Wheat | plastid | 12.88 | 18.55 |
| TraesCS5B01G091600.1 | Wheat | plastid | 19.14 | 18.18 |
| TraesCS6B01G186300.2 | Wheat | cytosol, mitochondrion | 13.25 | 17.22 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:16.12.4.3 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002885 | InterPro:IPR011990 | PFAM:PF01535 | PFAM:PF12854 |
| PFAM:PF13041 | PFAM:PF13812 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF343 | InterPro:Pentatricopeptide_repeat |
| SUPFAM:SSF81901 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | EnsemblPlantsGene:TraesCS7B01G401800 | EnsemblPlants:TraesCS7B01G401800.2 | SEG:seg |
Description
No Description!
Coordinates
chr7B:+:668029944..668032462
Molecular Weight (calculated)
90046.8 Da
IEP (calculated)
8.791
GRAVY (calculated)
-0.200
Length
815 amino acids
Sequence
(BLAST)
(BLAST)
001: MEATGRGVFP NKPTLPPGPK RRAPPSQQTL LPASPPPQAP SSLPLDSFLL HLTAAPAPAP VPRRTHQQTP HHQHHHPTPT PASSFLSPAS QALVLELSAT
101: PLPALPAFLA ARRDDLLRAA DLPSLLKALE LSGHWEWALA LLRWARAEGA AEGAAPLEMV VRALGREGRH DAVCALLDEM PLLPGARLDV RAYTTVLHAL
201: SREGRYDRAL RLFDELRREG VAPTRVTYNV VLDVYGRMGR SWPRVVALLD EMRAAGVEPD GFTASTVIAA AGRDGLVDEA VAFFEDLKAR GHAPCVVTYN
301: ALLQVFGKAG NYTEALRVIK EMEDAGCKPD AVTYNELAGS YARAGFYQEA AKCLDTMIDK GLLPNTFTYN TIMTAYGNAG KVDEALALFD RMKKNGFVPY
401: TNTYNLVLGM LGKKSRFAAM LETLGEMSRS GCTPNRVTWN TLLAVCGKRG MESYVTRVLE GMKSCRVELC RDTYNTLICA YGRCGSRANA FKMYDEMTAA
501: GFAPCLTTYN ALLNVLSRQG DWTAARSIVS KMKSEGFKPN DMSYSLLLQC HAKGGNAAGI EAIEKEVYQV YRGSTIFPSW VILRTLVIAN FKCRRLEGIE
601: RAFQEVKARG HKPDLVILNS MLSIYAKNGM YSKAMEMFES IEQSGLSPDL ITYNSLMDMY AKSNEPWEAE KILKRLRTSQ SQQQQQQQLK PDVVSYNTVI
701: NGFCKEGLIK EAQRVLSEMI ADGVAPCVIT YHTLVGGYAS REMFAEAREV VGYMIQRKLR PMELTYKRVV DSYCRAKRYE EARDFLAVVA ETDPKSDQKL
801: LGALAARVES AQFGR
101: PLPALPAFLA ARRDDLLRAA DLPSLLKALE LSGHWEWALA LLRWARAEGA AEGAAPLEMV VRALGREGRH DAVCALLDEM PLLPGARLDV RAYTTVLHAL
201: SREGRYDRAL RLFDELRREG VAPTRVTYNV VLDVYGRMGR SWPRVVALLD EMRAAGVEPD GFTASTVIAA AGRDGLVDEA VAFFEDLKAR GHAPCVVTYN
301: ALLQVFGKAG NYTEALRVIK EMEDAGCKPD AVTYNELAGS YARAGFYQEA AKCLDTMIDK GLLPNTFTYN TIMTAYGNAG KVDEALALFD RMKKNGFVPY
401: TNTYNLVLGM LGKKSRFAAM LETLGEMSRS GCTPNRVTWN TLLAVCGKRG MESYVTRVLE GMKSCRVELC RDTYNTLICA YGRCGSRANA FKMYDEMTAA
501: GFAPCLTTYN ALLNVLSRQG DWTAARSIVS KMKSEGFKPN DMSYSLLLQC HAKGGNAAGI EAIEKEVYQV YRGSTIFPSW VILRTLVIAN FKCRRLEGIE
601: RAFQEVKARG HKPDLVILNS MLSIYAKNGM YSKAMEMFES IEQSGLSPDL ITYNSLMDMY AKSNEPWEAE KILKRLRTSQ SQQQQQQQLK PDVVSYNTVI
701: NGFCKEGLIK EAQRVLSEMI ADGVAPCVIT YHTLVGGYAS REMFAEAREV VGYMIQRKLR PMELTYKRVV DSYCRAKRYE EARDFLAVVA ETDPKSDQKL
801: LGALAARVES AQFGR
001: MDGALFPHKP PYPIQSKRPP PSQSSNQSIK FSSATLHLPP PSPPSFPLDS LLHHLVHLSS PPPRHSNSAA ARFPSLEVST DSSSSKPILG IEIENERNGS
101: LKLLCKKEVV LVNSIVEQPL TGLSRFFDSV KSELLRTDLV SLVKGLDDSG HWERAVFLFE WLVLSSNSGA LKLDHQVIEI FVRILGRESQ YSVAAKLLDK
201: IPLQEYLLDV RAYTTILHAY SRTGKYEKAI DLFERMKEMG PSPTLVTYNV ILDVFGKMGR SWRKILGVLD EMRSKGLKFD EFTCSTVLSA CAREGLLREA
301: KEFFAELKSC GYEPGTVTYN ALLQVFGKAG VYTEALSVLK EMEENSCPAD SVTYNELVAA YVRAGFSKEA AGVIEMMTKK GVMPNAITYT TVIDAYGKAG
401: KEDEALKLFY SMKEAGCVPN TCTYNAVLSL LGKKSRSNEM IKMLCDMKSN GCSPNRATWN TMLALCGNKG MDKFVNRVFR EMKSCGFEPD RDTFNTLISA
501: YGRCGSEVDA SKMYGEMTRA GFNACVTTYN ALLNALARKG DWRSGENVIS DMKSKGFKPT ETSYSLMLQC YAKGGNYLGI ERIENRIKEG QIFPSWMLLR
601: TLLLANFKCR ALAGSERAFT LFKKHGYKPD MVIFNSMLSI FTRNNMYDQA EGILESIRED GLSPDLVTYN SLMDMYVRRG ECWKAEEILK TLEKSQLKPD
701: LVSYNTVIKG FCRRGLMQEA VRMLSEMTER GIRPCIFTYN TFVSGYTAMG MFAEIEDVIE CMAKNDCRPN ELTFKMVVDG YCRAGKYSEA MDFVSKIKTF
801: DPCFDDQSIQ RLALRVRENL ES
101: LKLLCKKEVV LVNSIVEQPL TGLSRFFDSV KSELLRTDLV SLVKGLDDSG HWERAVFLFE WLVLSSNSGA LKLDHQVIEI FVRILGRESQ YSVAAKLLDK
201: IPLQEYLLDV RAYTTILHAY SRTGKYEKAI DLFERMKEMG PSPTLVTYNV ILDVFGKMGR SWRKILGVLD EMRSKGLKFD EFTCSTVLSA CAREGLLREA
301: KEFFAELKSC GYEPGTVTYN ALLQVFGKAG VYTEALSVLK EMEENSCPAD SVTYNELVAA YVRAGFSKEA AGVIEMMTKK GVMPNAITYT TVIDAYGKAG
401: KEDEALKLFY SMKEAGCVPN TCTYNAVLSL LGKKSRSNEM IKMLCDMKSN GCSPNRATWN TMLALCGNKG MDKFVNRVFR EMKSCGFEPD RDTFNTLISA
501: YGRCGSEVDA SKMYGEMTRA GFNACVTTYN ALLNALARKG DWRSGENVIS DMKSKGFKPT ETSYSLMLQC YAKGGNYLGI ERIENRIKEG QIFPSWMLLR
601: TLLLANFKCR ALAGSERAFT LFKKHGYKPD MVIFNSMLSI FTRNNMYDQA EGILESIRED GLSPDLVTYN SLMDMYVRRG ECWKAEEILK TLEKSQLKPD
701: LVSYNTVIKG FCRRGLMQEA VRMLSEMTER GIRPCIFTYN TFVSGYTAMG MFAEIEDVIE CMAKNDCRPN ELTFKMVVDG YCRAGKYSEA MDFVSKIKTF
801: DPCFDDQSIQ RLALRVRENL ES
Arabidopsis Description
Pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64624]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.