Factsheet for VIT_11s0052g00600.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g017760.1.1	Tomato	plastid	71.5	69.72
PGSC0003DMT400010473	Potato	plastid	71.25	69.48
AT2G18940.1	Thale cress	plastid	67.48	67.4
KRH12254	Soybean	plastid	67.97	67.31
KRH37281	Soybean	plastid	67.36	66.63
Bra024454.1-P	Field mustard	plastid	65.29	65.61
CDY29249	Canola	plastid	65.16	65.48
CDY56509	Canola	plastid	65.04	65.28
GSMUA_Achr2P04910_001	Banana	plastid	61.02	60.14
KXG20531	Sorghum	plastid	53.35	56.44
Zm00001d036698_P001	Maize	plastid	53.59	55.98
Os05t0275000-01	Rice	cytosol, plastid	52.98	54.85
TraesCS7D01G482800.1	Wheat	plastid	51.89	52.33
TraesCS7A01G495500.1	Wheat	plastid	51.64	52.28
TraesCS7B01G401800.2	Wheat	plastid	51.52	51.9
HORVU7Hr1G111000.5	Barley	plastid	46.16	46.45
VIT_03s0091g00440.t01	Wine grape	plastid	37.52	37.98
VIT_07s0005g06720.t01	Wine grape	cytosol	11.81	24.49
VIT_13s0064g00400.t01	Wine grape	cytosol	13.76	22.83
VIT_18s0122g01380.t01	Wine grape	cytosol, mitochondrion, plastid	18.51	21.87
VIT_01s0011g01970.t01	Wine grape	cytosol	15.47	21.82
VIT_07s0005g01660.t01	Wine grape	plastid	21.92	20.76
VIT_16s0039g02560.t01	Wine grape	cytosol	12.18	20.41
VIT_17s0000g07500.t01	Wine grape	plastid	21.56	20.37
VIT_07s0031g01360.t01	Wine grape	plastid	12.06	20.25
VIT_05s0020g00690.t01	Wine grape	plastid	11.81	19.48
VIT_08s0007g08590.t01	Wine grape	cytosol	19.24	18.54
VIT_12s0028g01140.t01	Wine grape	cytosol	11.57	17.34

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100253054	wikigene:100253054	MapMan:16.12.4.3	EMBL:AM488642	ProteinID:CAN75494
ProteinID:CAN75494.1	ProteinID:CBI17864	ProteinID:CBI17864.3	UniProt:D7SQD3	EMBL:FN594964	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100253054	wikigene:LOC100253054	PFAM:PF01535	PFAM:PF12854
PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF343	InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00015CC0BB	ArrayExpress:VIT_11s0052g00600	EnsemblPlantsGene:VIT_11s0052g00600	EnsemblPlants:VIT_11s0052g00600.t01
RefSeq:XP_002267263	RefSeq:XP_002267263.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr11:-:18042963..18045734

Molecular Weight (calculated)

92904.8 Da

IEP (calculated)

8.398

GRAVY (calculated)

-0.250

Length

821 amino acids

Sequence
(BLAST)

001: MEGTLFPNRP SFPIPRTKST QPNHPHVKFN PATLPLPPQS PSPPSLPLDS LLQHLLHFSS PTHKPKPINP PKTNLKKFSA VSVSQLEGSV EEAQSPDGSV
101: EFLSRKGKFL LNSIVEHPLP GLNDFFDSVK FELLDVDLVS LLKGLDLSGN WKRAVLLFKW AILNLYSRNE KIDNQLVELM VRILGRESQH SVALRLLDEI
201: SVEEYSLDVR AWTTILHAYS RIGKYERAIT MFEKMRKTGL SPTLVTYNVM LDVYGKMGRS WNKILGLLDE MRSNGLEFDE FTCSTVISAC GREGLLDEAR
301: KFFARLKSEG YVAGTFTYNS LLQVFGKAGI YSEALSILKE MEKNNCPPDL VTYNELVAAY VRAGFHEEGA DFIDTMIRKG IMPNAITYTT VINAYGKAGK
401: EDKALSFFRQ MKESGCVPNV CTYNAILGML GKKSRLEEMI DMLCDMRSNG CAPNSVTWNT MLAMCGNKGM HKYVNRVFRE MKSCGFEPNR DTFNALIGAY
501: GRCGSQIDVV KMYEEMIKAG FTPCVTTYNA LLNALARRGD WEAAESVILD MKSKGFKPNE TSYSLMLNCY AKGGNGRGIE KIEEEIYNGH IFPSWILLRT
601: LVLANFKRRA LMGMERAFQE FCKHGYKPDL VLFNSMLSIF AKNKMYDRAH EMLRLIRESG LQPDLVTYNS LMDMYARGGE CWKGEEILKG IQKSGGKPDL
701: VSYNTVIKGF CRQGLMQEAI RTLSEMTISG IRPCIVTYNT FVAGYSGKGM FSEVEEVISY MIQHDCRPNE LTYKIVVDGY CKGKKYKEAM DFVSNITEMD
801: KSFDDQSLRR LTFRIREHME L

Best Arabidopsis Sequence Match ( AT2G18940.1 )
(BLAST)

001: MDGALFPHKP PYPIQSKRPP PSQSSNQSIK FSSATLHLPP PSPPSFPLDS LLHHLVHLSS PPPRHSNSAA ARFPSLEVST DSSSSKPILG IEIENERNGS
101: LKLLCKKEVV LVNSIVEQPL TGLSRFFDSV KSELLRTDLV SLVKGLDDSG HWERAVFLFE WLVLSSNSGA LKLDHQVIEI FVRILGRESQ YSVAAKLLDK
201: IPLQEYLLDV RAYTTILHAY SRTGKYEKAI DLFERMKEMG PSPTLVTYNV ILDVFGKMGR SWRKILGVLD EMRSKGLKFD EFTCSTVLSA CAREGLLREA
301: KEFFAELKSC GYEPGTVTYN ALLQVFGKAG VYTEALSVLK EMEENSCPAD SVTYNELVAA YVRAGFSKEA AGVIEMMTKK GVMPNAITYT TVIDAYGKAG
401: KEDEALKLFY SMKEAGCVPN TCTYNAVLSL LGKKSRSNEM IKMLCDMKSN GCSPNRATWN TMLALCGNKG MDKFVNRVFR EMKSCGFEPD RDTFNTLISA
501: YGRCGSEVDA SKMYGEMTRA GFNACVTTYN ALLNALARKG DWRSGENVIS DMKSKGFKPT ETSYSLMLQC YAKGGNYLGI ERIENRIKEG QIFPSWMLLR
601: TLLLANFKCR ALAGSERAFT LFKKHGYKPD MVIFNSMLSI FTRNNMYDQA EGILESIRED GLSPDLVTYN SLMDMYVRRG ECWKAEEILK TLEKSQLKPD
701: LVSYNTVIKG FCRRGLMQEA VRMLSEMTER GIRPCIFTYN TFVSGYTAMG MFAEIEDVIE CMAKNDCRPN ELTFKMVVDG YCRAGKYSEA MDFVSKIKTF
801: DPCFDDQSIQ RLALRVRENL ES

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64624]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.