Factsheet for Os05t0275000-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG20531	Sorghum	plastid	86.76	88.66
Zm00001d036698_P001	Maize	plastid	84.49	85.24
TraesCS7D01G482800.1	Wheat	plastid	81.84	79.73
TraesCS7A01G495500.1	Wheat	plastid	81.46	79.65
TraesCS7B01G401800.2	Wheat	plastid	80.96	78.77
HORVU7Hr1G111000.5	Barley	plastid	70.62	68.63
GSMUA_Achr2P04910_001	Banana	plastid	58.26	55.46
VIT_11s0052g00600.t01	Wine grape	plastid	54.85	52.98
CDY29249	Canola	plastid	52.33	50.8
Bra024454.1-P	Field mustard	plastid	52.21	50.67
KRH12254	Soybean	plastid	52.84	50.54
CDY56509	Canola	plastid	52.08	50.49
AT2G18940.1	Thale cress	plastid	52.21	50.37
KRH37281	Soybean	plastid	52.21	49.88
Solyc07g017760.1.1	Tomato	plastid	52.33	49.29
PGSC0003DMT400010473	Potato	plastid	51.83	48.81
Os07t0590600-00	Rice	plastid	33.29	33.67
Os07t0548300-01	Rice	plastid	19.04	23.41
Os07t0213300-01	Rice	cytosol	19.67	23.04
Os06t0710800-01	Rice	cytosol	14.12	22.76
Os03t0115300-00	Rice	plastid	13.75	22.24
Os02t0170000-02	Rice	cytosol	12.61	21.32
Os02t0750400-01	Rice	cytosol	5.67	21.23
Os06t0172000-01	Rice	plastid	13.49	20.94
Os03t0309800-02	Rice	plastid	12.61	19.96
Os03t0824100-01	Rice	plastid	19.55	17.86
Os08t0191900-01	Rice	plastid	12.36	16.09
Os12t0562300-01	Rice	cytosol	4.29	11.11

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.12.4.3	EntrezGene:9271043	ProteinID:AAT85125.1	EMBL:AK067135	ProteinID:BAF16987.1
ProteinID:BAS93109.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os05g0275000
EnsemblPlants:Os05t0275000-01	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF343	InterPro:Pentatricopeptide_repeat	UniProt:Q6ATD8	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0000401B7C	RefSeq:XP_015639397.1	SEG:seg	:	:

Description

Pentatricopeptide repeat domain containing protein. (Os05t0275000-01)

Coordinates

chr5:-:11253553..11256527

Molecular Weight (calculated)

87957.1 Da

IEP (calculated)

8.030

GRAVY (calculated)

-0.189

Length

793 amino acids

Sequence
(BLAST)

001: MDATGRGVFP NKPALPAGPK KRPPPHTVLL PATPPPPPSR SSLPLDSLLL HLTAAPPPPQ PPATRRPHPT PTPPHSFLSP AAQSLVAAIS SQPLPSLPAF
101: LSSRRDELLR SDLPSLLKAL ELSGHWEWAL ALLRWASDEG AADAAALEMV VRALGREGQH DVVCDLLDEM PLPPGSRLDV RAYTTVLHAL SRAGRYERAL
201: QLFAELRRQG VVPTIVTYNV VLDVYGRMGR SWPRIVALLE EMRAAGVEPD DFTASTVIAA CGRDGLLDQA VAFFEDLKAR GHVPCVVTYN ALLQVFGKAG
301: NYTEALRVLK EMEDSGCQPD AVTYNELAGT YARAGFFEEA AKCLDTMTSK GLLPNTFTYN TVMTAYANVG RVDEALALFD RMKKNGYVPN VNTYNLIFGM
401: LGKKSRFTAM LEMLEEMSRS GCTPNRVTWN TMLAVCGKRG MEDYVTRVLN GMKSCGVELS RDTYNTLISA YGRCGSRTYA FKMYDEMISS GFTPCLTTYN
501: ALLNVLSRQG DWSTAQSIVS KMLKNGFKPN DQSYSLLLQC YAKGGNAAGI ESIEKEVYVG TIFPSWVILR TLVIANFKCR RLEGVEKAFQ EVKAQGYKPD
601: LVIFNSMLAM YAKNGLYSKA TEMFDSIKQS GLSPDLITYN SLMDMYAKSN ESWEAEKILK QLKSSQVKPD VVSYNTVING FCKQGLIKEA QRILSEMIAD
701: GMAPCVVTYH TLVGGYASLE MFNEAREVVN YMIHHNLKPM ELTYRRVVDS YCKAKRYDEA REFLSEISDT DQNFDQKLQH MLEARIKDAQ FGR

Best Arabidopsis Sequence Match ( AT2G18940.1 )
(BLAST)

001: MDGALFPHKP PYPIQSKRPP PSQSSNQSIK FSSATLHLPP PSPPSFPLDS LLHHLVHLSS PPPRHSNSAA ARFPSLEVST DSSSSKPILG IEIENERNGS
101: LKLLCKKEVV LVNSIVEQPL TGLSRFFDSV KSELLRTDLV SLVKGLDDSG HWERAVFLFE WLVLSSNSGA LKLDHQVIEI FVRILGRESQ YSVAAKLLDK
201: IPLQEYLLDV RAYTTILHAY SRTGKYEKAI DLFERMKEMG PSPTLVTYNV ILDVFGKMGR SWRKILGVLD EMRSKGLKFD EFTCSTVLSA CAREGLLREA
301: KEFFAELKSC GYEPGTVTYN ALLQVFGKAG VYTEALSVLK EMEENSCPAD SVTYNELVAA YVRAGFSKEA AGVIEMMTKK GVMPNAITYT TVIDAYGKAG
401: KEDEALKLFY SMKEAGCVPN TCTYNAVLSL LGKKSRSNEM IKMLCDMKSN GCSPNRATWN TMLALCGNKG MDKFVNRVFR EMKSCGFEPD RDTFNTLISA
501: YGRCGSEVDA SKMYGEMTRA GFNACVTTYN ALLNALARKG DWRSGENVIS DMKSKGFKPT ETSYSLMLQC YAKGGNYLGI ERIENRIKEG QIFPSWMLLR
601: TLLLANFKCR ALAGSERAFT LFKKHGYKPD MVIFNSMLSI FTRNNMYDQA EGILESIRED GLSPDLVTYN SLMDMYVRRG ECWKAEEILK TLEKSQLKPD
701: LVSYNTVIKG FCRRGLMQEA VRMLSEMTER GIRPCIFTYN TFVSGYTAMG MFAEIEDVIE CMAKNDCRPN ELTFKMVVDG YCRAGKYSEA MDFVSKIKTF
801: DPCFDDQSIQ RLALRVRENL ES

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64624]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.