Factsheet for Os03t0309800-02

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0565000-01
Os02t0618200-01
Os02t0758000-01
Os03t0107500-00
Os03t0665200-01
Os04t0445600-00
Os04t0471400-01
Os06t0219500-00
Os07t0499800-01
Os08t0328300-02
Os09t0106700-01
Os09t0279000-01
Os09t0447000-00
Os09t0508500-02
Os10t0422600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06430.1	Os03t0107500-00	AT1G30860.1	21798944
AT3G06430.1	Os07t0499800-01	AT1G30860.1	21798944
AT3G06430.1	Os09t0106700-01	AT2G23290.1	21798944
AT3G06430.1	Os02t0565000-01	AT3G14180.1	21798944
AT3G06430.1	Os04t0445600-00	AT3G14180.1	21798944
AT3G06430.1	Os03t0665200-01	AT3G22550.1	21798944
AT3G06430.1	Os10t0422600-01	AT3G22550.1	21798944
AT3G06430.1	Os02t0758000-01	AT4G25200.1	21798944
AT3G06430.1	Os06t0219500-00	AT4G25200.1	21798944
AT3G06430.1	Os09t0447000-00	AT5G06710.1	21798944
AT3G06430.1	Os08t0328300-02	AT5G06780.1	21798944
AT3G06430.1	Os09t0279000-01	AT5G06780.1	21798944
AT3G06430.1	Os09t0508500-02	AT5G41070.1	21798944
AT3G06430.1	Os04t0471400-01	AT5G56250.1	21798944
AT3G06430.1	Os02t0618200-01	AT5G61380.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G138200.1	Wheat	cytosol, mitochondrion, plastid	78.04	74.19
TraesCS4A01G178100.5	Wheat	plastid	78.24	72.46
TraesCS4D01G132900.3	Wheat	plastid	78.04	72.27
HORVU4Hr1G024360.2	Barley	endoplasmic reticulum, vacuole	79.04	68.51
EER97871	Sorghum	plastid	76.05	68.04
Zm00001d018693_P001	Maize	plastid	73.65	64.62
KRH02451	Soybean	plastid	59.48	61.07
VIT_05s0020g00690.t01	Wine grape	plastid	60.48	60.84
KRH02371	Soybean	plastid	59.08	60.66
CDY24692	Canola	plastid	58.08	60.62
AT3G06430.1	Thale cress	plastid	58.28	60.08
GSMUA_Achr11P...	Banana	plastid	64.07	59.12
Bra020748.1-P	Field mustard	plastid	57.88	59.06
CDY05264	Canola	plastid	57.68	58.98
Solyc01g057200.2.1	Tomato	plastid	53.49	57.02
Solyc12g098990.1.1	Tomato	plastid	56.09	56.77
PGSC0003DMT400011734	Potato	plastid	55.29	55.96
PGSC0003DMT400022191	Potato	plastid	55.29	55.29
KRH37687	Soybean	plastid	46.91	48.45
Os06t0172000-01	Rice	plastid	35.13	34.44
Os03t0115300-00	Rice	plastid	32.34	33.06
Os02t0170000-02	Rice	cytosol	15.77	16.84
Os02t0750400-01	Rice	cytosol	6.19	14.62
Os06t0710800-01	Rice	cytosol	14.17	14.43
Os07t0548300-01	Rice	plastid	18.16	14.11
Os08t0191900-01	Rice	plastid	15.77	12.97
Os07t0590600-00	Rice	plastid	20.16	12.88
Os05t0275000-01	Rice	cytosol, plastid	19.96	12.61
Os07t0213300-01	Rice	cytosol	16.57	12.26
Os03t0824100-01	Rice	plastid	17.76	10.25
Os12t0562300-01	Rice	cytosol	4.39	7.19

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:4332626	ProteinID:ABF95564.1	ProteinID:ABF95565.1	ProteinID:ABF95566.1
EMBL:AK060922	EMBL:AK106141	EMBL:AK111530	EMBL:AK111624	ProteinID:BAF11827.1	ProteinID:BAS83851.1
ProteinID:EAZ26682.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009507	GO:GO:0009536	GO:GO:0009553	GO:GO:0009555	GO:GO:0009790
GO:GO:0009791	GO:GO:0009793	GO:GO:0009856	GO:GO:0009987	GO:GO:0016787	GO:GO:0019843
GO:GO:0048868	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os03g0309800	EnsemblPlants:Os03t0309800-02
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF301
InterPro:Pentatricopeptide_repeat	UniProt:Q10MG3	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0000DB41F2	RefSeq:XP_015633201.1

Description

Similar to PPR2. (Os03t0309800-01);Similar to PPR2. (Os03t0309800-02)

Coordinates

chr3:+:11048516..11053446

Molecular Weight (calculated)

56836.6 Da

IEP (calculated)

9.096

GRAVY (calculated)

-0.439

Length

501 amino acids

Sequence
(BLAST)

001: MALAAAATTF RPRLVVTAKA DNTDTRRRHW KAGEFPFPTS SDTPRRSART AERPPDKPRD EDGDSSRRTG RRHWKAGEFP GTQEDSRRPR RSPIKNVKKR
101: LDARAEAKAW ACTVTEALAD RIDAKNWQEA LQVFQMLKEQ PFYHPKEGTF MKLLLLLGRS GQPSRARYLF DEMLQQGCQP TPELYTALIA AYCRNGLLDD
201: AFRLLADMKA SPVCQPDVYT YSTIIKACVD ASRFDIVDAM YKDMADRSIA PNTVTQNIVL SGYGRAGRLD DMEKVLSAML DSTTSKPDVW TMNIILSLFG
301: NRGQIESMEK WYEKFRGYGI EPETRTLNIL IGAYGKKRMY DKMSAVMEYM RKLAFPWTTA TFNNVIEAFA DAGDAKNMEH TFNQMRAEGM KPDTKTFCCL
401: INGFGNAGLF HKVVGMVKLA ERLGVPMDTT FHNAVLMTCV KAEDLMEMER VFMRMKQIQC IPDATTYSIL VGAYRKEGMT DKIYVLQQEN PTLVPTDLVH
501: V

Best Arabidopsis Sequence Match ( AT3G06430.1 )
(BLAST)

001: MASMSLSFSS SLCSSRIPEG KRRFRHRDVG IVRCVLAASK SSPGSVTKKR LWKDGEFPGI TEPVNQRRTP IKNVKKKLDR RSKANGWVNT VTETLSDLIA
101: KKQWLQALEV FDMLREQTFY QPKEGTYMKL LVLLGKSGQP NRAQKLFDEM LEEGLEPTVE LYTALLAAYT RSNLIDDAFS ILDKMKSFPQ CQPDVFTYST
201: LLKACVDASQ FDLVDSLYKE MDERLITPNT VTQNIVLSGY GRVGRFDQME KVLSDMLVST ACKPDVWTMN IILSVFGNMG KIDMMESWYE KFRNFGIEPE
301: TRTFNILIGS YGKKRMYDKM SSVMEYMRKL EFPWTTSTYN NIIEAFADVG DAKNMELTFD QMRSEGMKAD TKTFCCLING YANAGLFHKV ISSVQLAAKF
401: EIPENTAFYN AVISACAKAD DLIEMERVYI RMKERQCVCD SRTFEIMVEA YEKEGMNDKI YYLEQERQKL MDRTVATKEM ENLPAG

Arabidopsis Description

EMB2750Pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQU6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.