Factsheet for Os02t0750400-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G075250.5	Barley	plastid	78.3	33.2
KXG30749	Sorghum	plastid	77.83	33.13
Zm00001d052240_P001	Maize	plastid	76.89	32.67
TraesCS6D01G282900.1	Wheat	plastid	80.66	31.67
TraesCS6A01G303300.1	Wheat	plastid	80.19	31.48
TraesCS6B01G332800.1	Wheat	plastid	76.89	28.8
GSMUA_Achr5P22880_001	Banana	plastid	60.85	25.29
VIT_07s0031g01360.t01	Wine grape	plastid	57.55	24.95
Solyc04g054270.2.1	Tomato	plastid	55.19	24.48
PGSC0003DMT400033331	Potato	plastid	53.77	23.9
CDY41990	Canola	plastid	51.89	23.35
CDY42639	Canola	plastid	52.36	22.98
Bra011847.1-P	Field mustard	plastid	51.89	22.63
KRH59429	Soybean	plastid	52.36	22.07
KRH43291	Soybean	plastid	52.83	21.29
AT4G39620.1	Thale cress	plastid	50.0	18.83
Os03t0115300-00	Rice	plastid	17.45	7.55
Os06t0710800-01	Rice	cytosol	17.45	7.52
Os02t0170000-02	Rice	cytosol	16.51	7.46
Os06t0172000-01	Rice	plastid	15.57	6.46
Os12t0562300-01	Rice	cytosol	8.96	6.21
Os03t0309800-02	Rice	plastid	14.62	6.19
Os05t0275000-01	Rice	cytosol, plastid	21.23	5.67
Os07t0590600-00	Rice	plastid	19.81	5.36
Os07t0213300-01	Rice	cytosol	16.98	5.32
Os07t0548300-01	Rice	plastid	14.62	4.81
Os08t0191900-01	Rice	plastid	13.21	4.6
Os03t0824100-01	Rice	plastid	16.51	4.03

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006397	GO:GO:0006412
GO:GO:0006417	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0019538	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os02g0750400
EnsemblPlants:Os02t0750400-01	PFAM:PF01535	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF490	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000393B10E	:	:

Description

Pentatricopeptide repeat domain containing protein. (Os02t0750400-01)

Coordinates

chr2:+:31530873..31531853

Molecular Weight (calculated)

23755.7 Da

IEP (calculated)

9.737

GRAVY (calculated)

-0.470

Length

212 amino acids

Sequence
(BLAST)

001: KMEQVFKSLL RSKEKPTHPT FNSMITNYGK ARLREKAECV LDKMTEMGFK PNYVTQECLI MMYAYCDCVS RARQIFDELV SSQNNVHLSS VNAMLDAYCM
101: NGLPMEADQL LDSVIKKGAV PSASTYKLLY KAYTKANDKK LIQKLLKRMN SQGIVPNKKF FLDALEAFGN TDKKPRTVPS KNSASKPDVE SANNSGTDTS
201: SKPNLSVWQV AA

Best Arabidopsis Sequence Match ( AT4G39620.2 )
(BLAST)

001: MDYLLTSPSS LRFSDFISSI PKETDHKWLR FSVNLGDARR STRTRITCGA ISSRRKLAER ESAERENRVL VRSLMSRISD REPLVKTLDK YVKVVRCDHC
101: FLLFEELGKS DKWLQCLEVF RWMQKQRWYI PDNGVYSKLI SVMGKKGQTR MAMWLFSEMK NSGCRPDASV YNALITAHLH TRDKAKALEK VRGYLDKMKG
201: IERCQPNVVT YNILLRAFAQ SGKVDQVNAL FKDLDMSPVS PDVYTFNGVM DAYGKNGMIK EMEAVLTRMR SNECKPDIIT FNVLIDSYGK KQEFEKMEQT
301: FKSLMRSKEK PTLPTFNSMI INYGKARMID KAEWVFKKMN DMNYIPSFIT YECMIMMYGY CGSVSRAREI FEEVGESDRV LKASTLNAML EVYCRNGLYI
401: EADKLFHNAS AFRVHPDAST YKFLYKAYTK ADMKEQVQIL MKKMEKDGIV PNKRFFLEAL EVFGSRLPGS GSENRKSTRS SRSRDSPKGR GGNQLTEFQD
501: KDLSSPFPES

Arabidopsis Description

EMB2453Pentatricopeptide repeat-containing protein At4g39620, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SV96]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.