CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052240_P001	Maize	plastid	91.57	91.38
Os02t0750400-01	Rice	cytosol	33.13	77.83
TraesCS6D01G282900.1	Wheat	plastid	80.92	74.63
TraesCS6A01G303300.1	Wheat	plastid	80.72	74.44
TraesCS6B01G332800.1	Wheat	plastid	78.51	69.08
HORVU6Hr1G075250.5	Barley	plastid	66.67	66.4
GSMUA_Achr5P22880_001	Banana	plastid	65.66	64.12
Solyc04g054270.2.1	Tomato	plastid	59.04	61.51
PGSC0003DMT400033331	Potato	plastid	58.63	61.22
VIT_07s0031g01360.t01	Wine grape	plastid	58.84	59.92
CDY41990	Canola	plastid	56.63	59.87
CDY42639	Canola	plastid	56.83	58.59
KRH59429	Soybean	plastid	58.43	57.85
Bra011847.1-P	Field mustard	plastid	56.22	57.61
KRH43291	Soybean	plastid	57.83	54.75
AT4G39620.1	Thale cress	plastid	55.22	48.85
OQU86802	Sorghum	cytosol	13.86	22.33
EER87934	Sorghum	plastid	20.88	21.14
KXG40345	Sorghum	plastid	19.68	20.16
EER97871	Sorghum	plastid	21.69	19.29
OQU77078	Sorghum	mitochondrion	15.46	15.59
EES13486	Sorghum	plastid	16.87	13.95
OQU84443	Sorghum	cytosol	16.67	13.72
KXG36606	Sorghum	plastid	20.28	13.07
EER99505	Sorghum	plastid	17.47	13.02
KXG20531	Sorghum	plastid	19.68	12.63
KXG36530	Sorghum	plastid	18.07	10.99
EES16159	Sorghum	plastid	18.27	10.44
OQU90703	Sorghum	plastid	18.67	10.37

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A194YR93	ncoils:Coil	GO:GO:0000003	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0007275	GO:GO:0008150	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KXG30749	ProteinID:KXG30749	ProteinID:KXG30749.1
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF490
InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3004G235100	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0003C709E4
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:58327330..58330359

Molecular Weight (calculated)

55850.7 Da

IEP (calculated)

9.798

GRAVY (calculated)

-0.361

Length

498 amino acids

Sequence
(BLAST)

001: MLACSSTSTP WPQRQPPSPC PVAGGAAPRH VALAARGKRR GAGAAGEEGV DEAAEAAELV RSVLRRTAGG KERLVPVLDR HVRGVRTEHC FLLFEELGRR
101: DAWLQCLEVF RWMQKQRWYV ADNGIYSKLI SVMGRKGQIR MAMWLFSQMR NSGCKPDTSV YNSLIGAHLH SRDKSKALAK ALGYFEKMKC IARCQPTIVT
201: YNILLRAFAQ AGDTKQVDIL FKDLDESVVS PDIYTYNGVL DAYGKNGMIK EMESVLLRMK SKQCRPDVIT FNILIDSYGR KQIFDKMEQV FKSLLRSKER
301: PTHPTFNSMI TNYGKARLRE KAEYVVKKME ELGYKPNYVT QECLIMMYAH CDCVSKARQV FDELVSSQNK VQLSSLNSML DAYCMNGLHT EADQLLDTAL
401: QKCVVPNGST YKLLYKAYTR ANDKVLVQKL LKRMNKQGIV PNKKFFLDAL EAFGTSERKP RTSPAINSAS KLGADSAGDS ESGTSNKPEV SVWQVAAT

Best Arabidopsis Sequence Match ( AT4G39620.1 )
(BLAST)

001: MDYLLTSPSS LRFSDFISSI PKETDHKWLR FSVNLGDARR STRTRITCGA ISSRRKLAER ESAERENRVL VRSLMSRISD REPLVKTLDK YVKVVRCDHC
101: FLLFEELGKS DKWLQCLEVF RWMQKQRWYI PDNGVYSKLI SVMGKKGQTR MAMWLFSEMK NSGCRPDASV YNALITAHLH TRDKAKALEK VRGYLDKMKG
201: IERCQPNVVT YNILLRAFAQ SGKVDQVNAL FKDLDMSPVS PDVYTFNGVM DAYGKNGMIK EMEAVLTRMR SNECKPDIIT FNVLIDSYGK KQEFEKMEQT
301: FKSLMRSKEK PTLPTFNSMI INYGKARMID KAEWVFKKMN DMNYIPSFIT YECMIMMYGY CGSVSRAREI FEEVGESDRV LKASTLNAML EVYCRNGLYI
401: EADKLFHNAS AFRVHPDAST YKFLYKAYTK ADMKEQVQIL MKKMEKDGIV PNKRFFLEAL EVFGSRLPGS GSENRKSTRS SRSRDSPKGR GGNQLTEFQD
501: KDNKHVFRAV QDCRKNYLEN LSGHDKGSRD ESRKPSQEKQ PLFASDQNNM MIKEKKELFT RVL

Arabidopsis Description

EMB2453Pentatricopeptide repeat-containing protein At4g39620, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SV96]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.