CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG40345	Sorghum	plastid	87.38	55.56
Zm00001d027349_P001	Maize	plastid	83.82	53.4
TraesCS4D01G353200.2	Wheat	cytosol	71.2	45.36
Os03t0115300-00	Rice	plastid	71.84	45.31
HORVU4Hr1G086600.3	Barley	plastid	69.58	43.35
TraesCS4B01G359900.1	Wheat	plastid	69.26	42.54
TraesCS5A01G528400.1	Wheat	plastid	70.55	40.67
KRH14115	Soybean	plastid	53.72	34.51
PGSC0003DMT400008123	Potato	cytosol, plastid	50.81	34.2
VIT_13s0064g00400.t01	Wine grape	cytosol	54.69	34.14
Solyc08g045780.2.1	Tomato	cytosol	50.49	33.91
CDX78150	Canola	plastid	48.22	30.72
Bra006974.1-P	Field mustard	cytosol, endoplasmic reticulum	49.19	30.46
AT3G53170.2	Thale cress	plastid	48.87	30.26
CDX73576	Canola	plastid	48.22	29.86
GSMUA_Achr11P...	Banana	endoplasmic reticulum	59.22	26.99
EER87934	Sorghum	plastid	38.51	24.19
EER97871	Sorghum	plastid	34.63	19.11
KXG30749	Sorghum	plastid	22.33	13.86
EER99505	Sorghum	plastid	21.04	9.73
OQU77078	Sorghum	mitochondrion	15.53	9.72
EES13486	Sorghum	plastid	18.77	9.63
KXG36606	Sorghum	plastid	23.3	9.31
OQU84443	Sorghum	cytosol	17.15	8.76
KXG20531	Sorghum	plastid	21.36	8.51
OQU90703	Sorghum	plastid	20.39	7.02
EES16159	Sorghum	plastid	18.45	6.54
KXG36530	Sorghum	plastid	16.5	6.23

Protein Annotations

EnsemblPlants:OQU86802	EnsemblPlantsGene:SORBI_3003G149900	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF425
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:OQU86802	ProteinID:OQU86802.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI0009DC8E45	UniProt:A0A1W0VXE9	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr3:-:15809323..15812152

Molecular Weight (calculated)

34231.9 Da

IEP (calculated)

5.100

GRAVY (calculated)

-0.225

Length

309 amino acids

Sequence
(BLAST)

001: QERKRWGGRT WWLLVAGEGL QPEDRDPETW RTAALALALA PAAEHEQPDA LAHILRTEAA VSGVSRKAAA ARQQSTNLWP RVVLEALDST VAACRWESAL
101: EIFELLRKQH WYEPRSQTYA RLLMMLGKCR QPGPAAALFK AMLSERLRPT ADVYTALVGA YGYSGFLDEA LAAVEQMKGA ADCKPDGYTF SSRRFDLIPA
201: VLDEMSYLGI ECNSVIHNAI IDGYGKAAMF EEMEGALSAM LESGSNVPDI YTMNSVIGAY GNHGRTDEME KSYSEFQLMG VEPDTKTFNI KSYGKAGMYD
301: KMMSIFSLV

Best Arabidopsis Sequence Match ( AT3G53170.1 )
(BLAST)

001: MALIQNPVQG TTSAYANEIA QLGFSRSVVQ QHISSPVYFR CIPTISITPT MCSTKVPNER TEKMNSGLIS TRHQVDPKKE LSRILRTDAA VKGIERKANS
101: EKYLTLWPKA VLEALDEAIK ENRWQSALKI FNLLRKQHWY EPRCKTYTKL FKVLGNCKQP DQASLLFEVM LSEGLKPTID VYTSLISVYG KSELLDKAFS
201: TLEYMKSVSD CKPDVFTFTV LISCCCKLGR FDLVKSIVLE MSYLGVGCST VTYNTIIDGY GKAGMFEEME SVLADMIEDG DSLPDVCTLN SIIGSYGNGR
301: NMRKMESWYS RFQLMGVQPD ITTFNILILS FGKAGMYKKM CSVMDFMEKR FFSLTTVTYN IVIETFGKAG RIEKMDDVFR KMKYQGVKPN SITYCSLVNA
401: YSKAGLVVKI DSVLRQIVNS DVVLDTPFFN CIINAYGQAG DLATMKELYI QMEERKCKPD KITFATMIKT YTAHGIFDAV QELEKQMISS DIGKKRLTE

Arabidopsis Description

LOW protein: PPR containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNX7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.