Factsheet for VIT_13s0064g00400.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008123	Potato	cytosol, plastid	62.42	67.32
KRH14115	Soybean	plastid	65.25	67.15
Solyc08g045780.2.1	Tomato	cytosol	61.62	66.3
AT3G53170.2	Thale cress	plastid	63.03	62.53
CDX78150	Canola	plastid	60.2	61.44
Bra006974.1-P	Field mustard	cytosol, endoplasmic reticulum	60.61	60.12
CDX73576	Canola	plastid	60.0	59.52
KXG40345	Sorghum	plastid	56.57	57.61
Zm00001d027349_P001	Maize	plastid	55.15	56.29
Os03t0115300-00	Rice	plastid	55.35	55.92
OQU86802	Sorghum	cytosol	34.14	54.69
HORVU4Hr1G086600.3	Barley	plastid	53.54	53.43
TraesCS4D01G353200.2	Wheat	cytosol	52.12	53.2
TraesCS4B01G359900.1	Wheat	plastid	52.32	51.49
TraesCS5A01G528400.1	Wheat	plastid	54.55	50.37
VIT_07s0005g06720.t01	Wine grape	cytosol	38.59	48.23
GSMUA_Achr11P...	Banana	endoplasmic reticulum	60.2	43.95
VIT_05s0020g00690.t01	Wine grape	plastid	35.76	35.54
VIT_07s0031g01360.t01	Wine grape	plastid	22.22	22.49
VIT_16s0039g02560.t01	Wine grape	cytosol	16.97	17.14
VIT_01s0011g01970.t01	Wine grape	cytosol	19.6	16.67
VIT_12s0028g01140.t01	Wine grape	cytosol	18.38	16.61
VIT_18s0122g01380.t01	Wine grape	cytosol, mitochondrion, plastid	21.41	15.25
VIT_11s0052g00600.t01	Wine grape	plastid	22.83	13.76
VIT_03s0091g00440.t01	Wine grape	plastid	21.82	13.32
VIT_17s0000g07500.t01	Wine grape	plastid	21.41	12.2
VIT_07s0005g01660.t01	Wine grape	plastid	20.61	11.76
VIT_08s0007g08590.t01	Wine grape	cytosol	18.18	10.56

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100251669	wikigene:100251669	MapMan:35.1	ProteinID:CCB49531	ProteinID:CCB49531.1
UniProt:F6HBC9	EMBL:FN595509	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100251669
wikigene:LOC100251669	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF425
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002107EF5	ArrayExpress:VIT_13s0064g00400
EnsemblPlantsGene:VIT_13s0064g00400	EnsemblPlants:VIT_13s0064g00400.t01	RefSeq:XP_002273156	RefSeq:XP_002273156.2	:	:

Description

No Description!

Coordinates

chr13:-:21969333..21981286

Molecular Weight (calculated)

56303.6 Da

IEP (calculated)

8.328

GRAVY (calculated)

-0.197

Length

495 amino acids

Sequence
(BLAST)

001: MEPHLLDPTS LRWSSSIPLT YTTCSLKVLK ETKPTSNPPF LFVRAGKRSS GSSQNGLQRQ PKKDLSRILR TEAAISGIER KANSRKYSTL WPKAVLEALD
101: EAIRENRYES ALKIFGLLRK QHWYEPRCQT YTKLLMMLGK CKQPEQASLL FEVMLSEGLR PTLDVYTALV SAYGHSGQLD KAFCTVEDMK SVSDCKPDVY
201: TYSILIKCCT TLGRFDLIER IFTEMSYLGI ECSTVTYNTI IDGYGKADMF ELMESSLTEM IESGTCLPDI FTLNSFIWAY GNSGQIEKME KWYDEFQLMG
301: IRPDIKTFNI LIRSYGKACM YEKMVSVMEF MKKRFYSPTI VTFNIVIEMF GRVGNIEKME EFFLKMKHQG VKPNSITYCS LVSAYSKAGY LKKVDSILRQ
401: IENSDVTLDT PFFNCVLSAY GQAGDVERMG ELFLVMKERK CKPDNITFAT MIQAYNAQGM IEAAQNLEVN MITTKNKSAS MGNHLSINLA KLGLE

Best Arabidopsis Sequence Match ( AT3G53170.1 )
(BLAST)

001: MALIQNPVQG TTSAYANEIA QLGFSRSVVQ QHISSPVYFR CIPTISITPT MCSTKVPNER TEKMNSGLIS TRHQVDPKKE LSRILRTDAA VKGIERKANS
101: EKYLTLWPKA VLEALDEAIK ENRWQSALKI FNLLRKQHWY EPRCKTYTKL FKVLGNCKQP DQASLLFEVM LSEGLKPTID VYTSLISVYG KSELLDKAFS
201: TLEYMKSVSD CKPDVFTFTV LISCCCKLGR FDLVKSIVLE MSYLGVGCST VTYNTIIDGY GKAGMFEEME SVLADMIEDG DSLPDVCTLN SIIGSYGNGR
301: NMRKMESWYS RFQLMGVQPD ITTFNILILS FGKAGMYKKM CSVMDFMEKR FFSLTTVTYN IVIETFGKAG RIEKMDDVFR KMKYQGVKPN SITYCSLVNA
401: YSKAGLVVKI DSVLRQIVNS DVVLDTPFFN CIINAYGQAG DLATMKELYI QMEERKCKPD KITFATMIKT YTAHGIFDAV QELEKQMISS DIGKKRLTE

Arabidopsis Description

LOW protein: PPR containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNX7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.