Factsheet for VIT_17s0000g07500.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063174	Potato	plastid	74.68	75.47
KRH03384	Soybean	nucleus	74.34	75.2
KRH56998	Soybean	nucleus	74.22	75.17
Solyc03g113630.2.1	Tomato	nucleus	74.34	75.12
AT1G74850.1	Thale cress	plastid	72.61	73.2
CDY45398	Canola	plastid	72.15	72.57
Bra015889.1-P	Field mustard	plastid	72.04	72.45
CDX73117	Canola	plastid	71.81	72.31
GSMUA_Achr1P18290_001	Banana	cytosol	51.21	67.02
HORVU5Hr1G114630.1	Barley	mitochondrion	48.45	50.54
TraesCS5A01G486300.1	Wheat	plastid	49.6	49.6
TraesCS5D01G500300.1	Wheat	plastid	49.48	49.43
Os03t0824100-01	Rice	plastid	49.25	49.31
TraesCS5B01G500100.1	Wheat	plastid	49.37	48.81
OQU90703	Sorghum	plastid	49.48	47.94
Zm00001d022599_P002	Maize	plastid	49.02	47.65
VIT_07s0005g06720.t01	Wine grape	cytosol	10.59	23.23
VIT_07s0005g01660.t01	Wine grape	plastid	22.78	22.84
VIT_07s0031g01360.t01	Wine grape	plastid	12.43	22.09
VIT_11s0052g00600.t01	Wine grape	plastid	20.37	21.56
VIT_03s0091g00440.t01	Wine grape	plastid	20.02	21.45
VIT_13s0064g00400.t01	Wine grape	cytosol	12.2	21.41
VIT_16s0039g02560.t01	Wine grape	cytosol	11.62	20.61
VIT_08s0007g08590.t01	Wine grape	cytosol	20.14	20.54
VIT_18s0122g01380.t01	Wine grape	cytosol, mitochondrion, plastid	16.0	20.0
VIT_05s0020g00690.t01	Wine grape	plastid	11.28	19.68
VIT_01s0011g01970.t01	Wine grape	cytosol	13.0	19.42
VIT_12s0028g01140.t01	Wine grape	cytosol	11.05	17.52

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100251853	wikigene:100251853	MapMan:15.6.1.2.2.2	ProteinID:CCB43022	ProteinID:CCB43022.1
UniProt:F6GSY1	EMBL:FN594950	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009295	GO:GO:0009451	GO:GO:0009507	GO:GO:0009508	GO:GO:0009536	GO:GO:0009987
GO:GO:0016787	GO:GO:0042793	GO:GO:0045893	GO:GO:0090305	InterPro:IPR002625	InterPro:IPR002885
InterPro:IPR011990	EntrezGene:LOC100251853	wikigene:LOC100251853	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812
PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF726	InterPro:Pentatricopeptide_repeat	SMART:SM00463
InterPro:Smr_dom	TIGR:TC66705	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00015C8408	ArrayExpress:VIT_17s0000g07500
EnsemblPlantsGene:VIT_17s0000g07500	EnsemblPlants:VIT_17s0000g07500.t01	unigene:Vvi.10570	RefSeq:XP_002280557	RefSeq:XP_002280557.1	SEG:seg

Description

No Description!

Coordinates

chr17:+:8440757..8447397

Molecular Weight (calculated)

97795.4 Da

IEP (calculated)

6.230

GRAVY (calculated)

-0.227

Length

869 amino acids

Sequence
(BLAST)

001: MNLSPSLLIS SSTSATLLRP SHVNLRPNPN LNRHLFPAKA TDFFGYQRIL ASAARIRAKP KELVLGNPSV TVEKGKYSYD VETLINKLSS LPPRGSIARC
101: LDVFKNKLSL NDFALVFKEF AQRGDWQRSL RLFKYMQRQI WCKPNEHIYT IMIGVLGREG LLEKCQEIFD EMPSHGVAPS VFSFTALINA YGRNGQYKSS
201: LELLDRMKKE RVSPSILTYN TVINSCARGG LDWEELLGLF AQMRHEGIQA DIVTYNTLLS ACARRGLGDE AEMVFRTMNE GGILPDITTY SYLVETFGKL
301: NRLEKVSELL KEMESGGSFP DITSYNVLLE AHAQSGSIKE AMGVFRQMQG AGCVPNAATY SILLNLYGRH GRYDDVRDLF LEMKVSNTEP NAATYNILIN
401: VFGEGGYFKE VVTLFHDMVE ENVEPNMETY EGLIFACGKG GLHEDAKKIL LHMNEKGVVP SSKAYTGVIE AYGQAALYEE ALVAFNTMNE VGSKPTVETY
501: NSLIQMFAKG GLYKESEAIL LKMGQSGVAR NRDTFNGVIE AFRQGGQFEE AIKAYVEMEK ARCDPDEQTL EAVLSVYCFA GLVEESEEQF GEIKALGILP
601: SVMCYCMMLA VYAKADRWDD AHQLLDEMFT NRVSNIHQVI GQMIRGDYDD DSNWQMVEYV FEKLKSEGCS LGVRFYNTLL EALWWLGQKE RATRVLNEAT
701: KRGLFPELFR KNKLVWSVDV HRMWEGAACT AISVWLNNMH EMFISGDDLP QLASAVVVRG HMEKSSITRD FPVAKSAYAF LNEVSSSFCF PGWNKGRIVC
801: QRSQLKRILS VTEQHSDEYK KDRIITLSNS PFPLPGTNTS MSNVKRDQLS NADAERSIMT RTELMTSTV

Best Arabidopsis Sequence Match ( AT1G74850.1 )
(BLAST)

001: MNLAIPNPNS HHLSFLIQNS SFIGNRRFAD GNRLRFLSGG NRKPCSFSGK IKAKTKDLVL GNPSVSVEKG KYSYDVESLI NKLSSLPPRG SIARCLDIFK
101: NKLSLNDFAL VFKEFAGRGD WQRSLRLFKY MQRQIWCKPN EHIYTIMISL LGREGLLDKC LEVFDEMPSQ GVSRSVFSYT ALINAYGRNG RYETSLELLD
201: RMKNEKISPS ILTYNTVINA CARGGLDWEG LLGLFAEMRH EGIQPDIVTY NTLLSACAIR GLGDEAEMVF RTMNDGGIVP DLTTYSHLVE TFGKLRRLEK
301: VCDLLGEMAS GGSLPDITSY NVLLEAYAKS GSIKEAMGVF HQMQAAGCTP NANTYSVLLN LFGQSGRYDD VRQLFLEMKS SNTDPDAATY NILIEVFGEG
401: GYFKEVVTLF HDMVEENIEP DMETYEGIIF ACGKGGLHED ARKILQYMTA NDIVPSSKAY TGVIEAFGQA ALYEEALVAF NTMHEVGSNP SIETFHSLLY
501: SFARGGLVKE SEAILSRLVD SGIPRNRDTF NAQIEAYKQG GKFEEAVKTY VDMEKSRCDP DERTLEAVLS VYSFARLVDE CREQFEEMKA SDILPSIMCY
601: CMMLAVYGKT ERWDDVNELL EEMLSNRVSN IHQVIGQMIK GDYDDDSNWQ IVEYVLDKLN SEGCGLGIRF YNALLDALWW LGQKERAARV LNEATKRGLF
701: PELFRKNKLV WSVDVHRMSE GGMYTALSVW LNDINDMLLK GDLPQLAVVV SVRGQLEKSS AARESPIAKA AFSFLQDHVS SSFSFTGWNG GRIMCQRSQL
801: KQLLSTKEPT SEESENKNLV ALANSPIFAA GTRASTSSDT NHSGNPTQRR TRTKKELAGS TA

Arabidopsis Description

PTAC2PTAC2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNJ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.