Factsheet for VIT_08s0007g08590.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 6
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66918	Soybean	cytosol	69.48	70.73
Solyc04g015950.1.1	Tomato	plastid	66.55	66.71
AT2G41720.1	Thale cress	cytosol, plastid	64.32	66.67
Bra004642.1-P	Field mustard	cytosol, plastid	62.91	65.53
CDX79920	Canola	cytosol, plastid	62.68	65.36
CDY23832	Canola	plastid	62.68	65.28
GSMUA_Achr7P21150_001	Banana	cytosol, plastid	61.97	63.01
KRG95241	Soybean	plastid	49.53	61.97
Os07t0213300-01	Rice	cytosol	49.18	61.89
KXG36530	Sorghum	plastid	57.16	59.46
HORVU2Hr1G056820.1	Barley	plastid	56.22	58.49
Zm00001d021871_P002	Maize	plastid	54.81	58.01
TraesCS2B01G269700.1	Wheat	plastid	55.05	57.48
TraesCS2D01G244500.3	Wheat	plastid	55.52	56.44
TraesCS2A01G239500.2	Wheat	plastid	54.93	54.8
VIT_16s0039g02560.t01	Wine grape	cytosol	11.85	20.61
VIT_07s0005g06720.t01	Wine grape	cytosol	9.51	20.45
VIT_07s0031g01360.t01	Wine grape	plastid	11.62	20.25
VIT_17s0000g07500.t01	Wine grape	plastid	20.54	20.14
VIT_18s0122g01380.t01	Wine grape	cytosol, mitochondrion, plastid	15.73	19.28
VIT_07s0005g01660.t01	Wine grape	plastid	19.6	19.26
VIT_11s0052g00600.t01	Wine grape	plastid	18.54	19.24
VIT_03s0091g00440.t01	Wine grape	plastid	17.72	18.62
VIT_13s0064g00400.t01	Wine grape	cytosol	10.56	18.18
VIT_12s0028g01140.t01	Wine grape	cytosol	11.5	17.88
VIT_05s0020g00690.t01	Wine grape	plastid	10.45	17.87
VIT_01s0011g01970.t01	Wine grape	cytosol	12.21	17.87

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100241921	wikigene:100241921	MapMan:35.1	ProteinID:CBI29835	ProteinID:CBI29835.3
UniProt:D7THV9	EMBL:FN595991	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100241921	wikigene:LOC100241921	PFAM:PF01535	PFAM:PF13041
PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1614	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452
TIGR:TC66066	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001BE393C	ArrayExpress:VIT_08s0007g08590	EnsemblPlantsGene:VIT_08s0007g08590
EnsemblPlants:VIT_08s0007g08590.t01	unigene:Vvi.12982	RefSeq:XP_002278330	RefSeq:XP_002278330.2	RefSeq:XP_010653775.1	SEG:seg

Description

No Description!

Coordinates

chr8:-:21962456..21970146

Molecular Weight (calculated)

96093.5 Da

IEP (calculated)

9.444

GRAVY (calculated)

-0.252

Length

852 amino acids

Sequence
(BLAST)

001: MSSTPNPSPI IFDFPHSTHS PHPKSSNPTF TTHKTLISCK ESKSKGALEE KKKVVFVDYD NGKHQVSTHV SGLRKADIPK HYRLRVEADR FQKDWSVSEV
101: VERLLKLNHW DDVEGLLNRW VGRFSRKNFP LLIREITQIG SLEHSVQVFR WMKNQKNYCA RNDIYNMMIR LHARHNIVDQ ARGLFFEMQK WRCKPDAETY
201: NALINAHGRA GQWRWAMNIM DDMLRAAIPP SRSTYNNLIN ACGSSGNWKE ALNVCKKMTE NGVGPDLVTH NIVLSAYKRG NQYSKVLSYF ELMKGTNIRP
301: DTTTLNIVIY CLVKLGQNGK AIDIFNSMKE KRSECYPDVV TFTTIIHLYS VCGQIENCQT AFNTMLAEGL KPNIVSYNAL IGAYASHGMD KEAFSVFNEI
401: KKNGFHPDVV SYTSLLNAYG KSGKPEKAMK VFELMRRNHC KPNLVSYNAL IDAYGSKGLL TEAVEILHEM ERNGVQPNIV SICTLLAACG RCGQKVKIKS
501: VLSAAELRGI KLNTTAYNSA IGSYLSVGEY DKALSLYRAM RTKKVKPDPV TYNVLISGCC KMSKYGEALG FLDEMMDLKI PLSKEVYSSV ICAYSKQGQV
601: TEAESMFTKM KMVGCRPDVI TYTAMIHAYD VAENWEKASA LFLEMETDDV QPDSIACSSL MRAFNKGGQP AKVLVLAEFM REKKIPFNNS SFFEMVSACS
701: LLREWREIIG LIKLMEPSIS VVSIGLLNQL LHFLGKSGKI ETMMKLFYKI VASGAEINFY TYSILLKNLL AAGNWRKYIE VLQWMEEAGL QPSVGMYRSI
801: SSFAQNRSGA EYAAVIQERI ESLKRNSRNQ NPTKKLNDSL LPASSLLDGT KV

Best Arabidopsis Sequence Match ( AT2G41720.1 )
(BLAST)

001: MATVTNFKLV TPPESSRADK PGATKASDAF QEKKSVSVNY DRGEHEVSVN IGGLRKADIP RRYRIRVEND RFQKDWSVSE VVDRLMALNR WEEVDGVLNS
101: WVGRFARKNF PVLIRELSRR GCIELCVNVF KWMKIQKNYC ARNDIYNMMI RLHARHNWVD QARGLFFEMQ KWSCKPDAET YDALINAHGR AGQWRWAMNL
201: MDDMLRAAIA PSRSTYNNLI NACGSSGNWR EALEVCKKMT DNGVGPDLVT HNIVLSAYKS GRQYSKALSY FELMKGAKVR PDTTTFNIII YCLSKLGQSS
301: QALDLFNSMR EKRAECRPDV VTFTSIMHLY SVKGEIENCR AVFEAMVAEG LKPNIVSYNA LMGAYAVHGM SGTALSVLGD IKQNGIIPDV VSYTCLLNSY
401: GRSRQPGKAK EVFLMMRKER RKPNVVTYNA LIDAYGSNGF LAEAVEIFRQ MEQDGIKPNV VSVCTLLAAC SRSKKKVNVD TVLSAAQSRG INLNTAAYNS
501: AIGSYINAAE LEKAIALYQS MRKKKVKADS VTFTILISGS CRMSKYPEAI SYLKEMEDLS IPLTKEVYSS VLCAYSKQGQ VTEAESIFNQ MKMAGCEPDV
601: IAYTSMLHAY NASEKWGKAC ELFLEMEANG IEPDSIACSA LMRAFNKGGQ PSNVFVLMDL MREKEIPFTG AVFFEIFSAC NTLQEWKRAI DLIQMMDPYL
701: PSLSIGLTNQ MLHLFGKSGK VEAMMKLFYK IIASGVGINL KTYAILLEHL LAVGNWRKYI EVLEWMSGAG IQPSNQMYRD IISFGERSAG IEFEPLIRQK
801: LESLRNKGEG LIPTFRHEGT LL

Arabidopsis Description

EMB2654EMB2654 [Source:UniProtKB/TrEMBL;Acc:A0A178VXZ9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.