Factsheet for Zm00001d021871_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36530	Sorghum	plastid	91.8	90.23
TraesCS2B01G269700.1	Wheat	plastid	78.14	77.08
HORVU2Hr1G056820.1	Barley	plastid	77.64	76.31
Os07t0213300-01	Rice	cytosol	64.1	76.22
TraesCS2D01G244500.3	Wheat	plastid	78.76	75.66
TraesCS2A01G239500.2	Wheat	plastid	78.63	74.12
GSMUA_Achr7P21150_001	Banana	cytosol, plastid	61.37	58.95
VIT_08s0007g08590.t01	Wine grape	cytosol	58.01	54.81
KRH66918	Soybean	cytosol	54.91	52.81
AT2G41720.1	Thale cress	cytosol, plastid	53.42	52.31
Solyc04g015950.1.1	Tomato	plastid	54.16	51.29
Bra004642.1-P	Field mustard	cytosol, plastid	51.93	51.1
CDY23832	Canola	plastid	51.93	51.1
CDX79920	Canola	cytosol, plastid	51.68	50.92
KRG95241	Soybean	plastid	38.76	45.81
Zm00001d036698_P001	Maize	plastid	20.5	20.99
Zm00001d022003_P001	Maize	plastid	18.51	18.74
Zm00001d052240_P001	Maize	plastid	11.43	18.44
Zm00001d027349_P001	Maize	plastid	11.06	18.35
Zm00001d037476_P001	Maize	plastid	10.43	17.07
Zm00001d021716_P001	Maize	plastid	14.16	17.07
Zm00001d014751_P003	Maize	plastid	11.18	16.92
Zm00001d015377_P003	Maize	plastid	12.17	16.42
Zm00001d022599_P002	Maize	plastid	17.52	15.77
Zm00001d030624_P001	Maize	plastid	16.4	15.17
Zm00001d024248_P001	Maize	plastid	11.18	15.0
Zm00001d018693_P001	Maize	plastid	10.31	14.54

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A1D6IHE4	GO:GO:0000003	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009507	GO:GO:0009536	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987
GO:GO:0010239	InterPro:IPR002885	InterPro:IPR011990	ProteinID:ONM58923.1	PFAM:PF13041	PFAM:PF13812
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1614	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0008448F1D	EnsemblPlantsGene:Zm00001d021871	EnsemblPlants:Zm00001d021871_P002	EnsemblPlants:Zm00001d021871_T002	SEG:seg

Description

Pentatricopeptide repeat-containing protein

Coordinates

chr7:-:165006869..165021222

Molecular Weight (calculated)

90571.9 Da

IEP (calculated)

8.911

GRAVY (calculated)

-0.176

Length

805 amino acids

Sequence
(BLAST)

001: MSSAPPPPPS LNPEVPPRIV RAPPRRPPPR APGPPPWAER RPAVSVDLDR GRRSVRTEVD GVRAASLPAR HRLRVEGNRW QRDWKVSEVV ARLLALPHAD
101: ADAVDAVLNC WAGRFARRNF PLLIREIAIS GSLKHAVHVF RWMKNQENYC ARNDIYGMMI RLHARHNKVD QARGLFFEMQ EWRCKPNTDT YNSLIHAHAR
201: AGQWCWAINI MDDMQRAAIP PSRTTYNNVI NACGAAGNWK KALELCKKMT ENGVGPDLIT HNIVLSAFKN GAQYSKAIAY FEIMKSSKVA PDTCTMNIVI
301: HCLVKIGLYG EAIELFNSMR ERRTTCHPDV VTYTSIMYSY SVCGQAENCK AVFDIMVAEG VRPNIVSYNA LLGAYASHGM HTEALETFKL LKQNGLRPDI
401: VSYTSLLNAY GRSAQPEKAR EVFNEMRKNA CKPNKVSYNA LIDAYGSAGM LKEAISLLHE MEQDGIQPDV ISISTLLTAC GRCKQLTKID IILAAAKSRG
501: IQLNTVAYNS GIGSYLSLGD YKKALVLYTS MRAGNVKPDA VTYNILISGS CKLGRYVESL KFFEDMLDLN IHLTKEVYSS VICSYVKQAS GKLTEAASTF
601: NSMKETGCFP DVLTYTTLIK AYSDDGSWRR AWDLFKEMEN NGTQPDAIVC SSLMEALNKG GQPERVLQLI EFMKQKKIQL NQKAYFEIIS SCTMLRDWKT
701: ASQIIEHLDS SLSSISFGTL NHILNFLGKC GRTESMMKVL QWMEDAGVCP TLYMYQSVLP YIWRDNSMDY VTLMQEKISM TLPNLIIVCM KNMLFFFDLI
801: IYLNI

Best Arabidopsis Sequence Match ( AT2G41720.3 )
(BLAST)

001: MATVTNFKLV TPPESSRADK PGATKASDAF QEKKSVSVNY DRGEHEVSVN IGGLRKADIP RRYRIRVEND RFQKDWSVSE VVDRLMALNR WEEVDGVLNS
101: WVGRFARKNF PVLIRELSRR GCIELCVNVF KWMKIQKNYC ARNDIYNMMI RLHARHNWVD QARGLFFEMQ KWSCKPDAET YDALINAHGR AGQWRWAMNL
201: MDDMLRAAIA PSRSTYNNLI NACGSSGNWR EALEVCKKMT DNGVGPDLVT HNIVLSAYKS GRQYSKALSY FELMKGAKVR PDTTTFNIII YCLSKLGQSS
301: QALDLFNSMR EKRAECRPDV VTFTSIMHLY SVKGEIENCR AVFEAMVAEG LKPNIVSYNA LMGAYAVHGM SGTALSVLGD IKQNGIIPDV VSYTCLLNSY
401: GRSRQPGKAK EVFLMMRKER RKPNVVTYNA LIDAYGSNGF LAEAVEIFRQ MEQDGIKPNV VSVCTLLAAC SRSKKKVNVD TVLSAAQSRG INLNTAAYNS
501: AIGSYINAAE LEKAIALYQS MRKKKVKADS VTFTILISGS CRMSKYPEAI SYLKEMEDLS IPLTKEVYSS VLCAYSKQGQ VTEAESIFNQ MKMAGCEPDV
601: IAYTSMLHAY NASEKWGKAC ELFLEMEANG IEPDSIACSA LMRAFNKGGQ PSNVFVLMDL MREKEIPFTG AVFFEIFSAC NTLQEWKRAI DLIQMMDPYL
701: PSLSIGLTNQ MLHLFGKSGK VEAMMKLFYK IIASGVGINL KTYAILLEHL LAVGNWRKYI EVLEWMSGAG IQPSNQMYRD IISFGERSAG IEFEPLIRQK
801: LGEMREECKI NDSVT

Arabidopsis Description

EMB2654EMB2654 [Source:UniProtKB/TrEMBL;Acc:A0A178VXZ9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.