Factsheet for Bra004642.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79920	Canola	cytosol, plastid	97.56	97.67
AT2G41720.1	Thale cress	cytosol, plastid	88.39	87.96
VIT_08s0007g08590.t01	Wine grape	cytosol	65.53	62.91
KRH66918	Soybean	cytosol	63.08	61.65
Solyc04g015950.1.1	Tomato	plastid	61.49	59.18
Os07t0213300-01	Rice	cytosol	47.92	57.9
GSMUA_Achr7P21150_001	Banana	cytosol, plastid	54.89	53.58
KXG36530	Sorghum	plastid	53.42	53.36
HORVU2Hr1G056820.1	Barley	plastid	53.18	53.11
KRG95241	Soybean	plastid	44.13	53.01
TraesCS2B01G269700.1	Wheat	plastid	52.69	52.82
Zm00001d021871_P002	Maize	plastid	51.1	51.93
TraesCS2D01G244500.3	Wheat	plastid	52.93	51.67
TraesCS2A01G239500.2	Wheat	plastid	52.32	50.12
Bra018246.1-P	Field mustard	plastid	13.33	22.06
Bra035290.1-P	Field mustard	plastid	18.95	19.38
Bra017881.1-P	Field mustard	plastid	16.38	19.14
Bra015889.1-P	Field mustard	plastid	20.05	18.98
Bra019526.1-P	Field mustard	cytosol	6.11	18.94
Bra035352.1-P	Field mustard	mitochondrion	11.0	18.67
Bra024454.1-P	Field mustard	plastid	18.46	18.48
Bra011847.1-P	Field mustard	plastid	10.76	18.11
Bra020748.1-P	Field mustard	plastid	10.76	17.92
Bra006974.1-P	Field mustard	cytosol, endoplasmic reticulum	10.02	16.43
Bra037464.1-P	Field mustard	plastid	9.78	14.95
Bra005366.1-P	Field mustard	cytosol, mitochondrion, nucleus	13.08	14.08
Bra021733.1-P	Field mustard	cytosol	18.09	13.48
Bra018247.1-P	Field mustard	nucleus	3.91	10.56

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra004642	EnsemblPlants:Bra004642.1	EnsemblPlants:Bra004642.1-P	GO:GO:0000003
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008380	GO:GO:0009507	GO:GO:0009536	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0009987	GO:GO:0010239	InterPro:IPR002885	InterPro:IPR011990	UniProt:M4CKA7
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1614
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002547792	:

Description

AT2G41720 (E=0.0) EMB2654 | EMB2654 (EMBRYO DEFECTIVE 2654)

Coordinates

chrA05:-:1188265..1192111

Molecular Weight (calculated)

91968.2 Da

IEP (calculated)

9.113

GRAVY (calculated)

-0.218

Length

818 amino acids

Sequence
(BLAST)

001: MATVTHLVTP PESSRAYRPR AAAKTSEALQ EKKSVYVNYD RGEHEVSVRV SGFRKADIAR RFRVRVENDR FQKDWSVTEV AERLVALNRW EEVDGVLNSW
101: VGRFARKNFP ILISELSRRG CIDLCVNVFN WMKNQKNYCA RNDIYNTMIR LHARCNRVDQ ARGLFFEMQK WSCKPDAETY NALINAHGRA GQWRWAMNLM
201: DDMLRAAIAP SRTTYNNLIN ACGSSGNWRE ALEVCKKMTD NGVGPDLVTH NIVLSAYKSG RQYSKALSYF ELMKGAKVRP DTTTFNIIIY CLSKLGQTSQ
301: ALDVFNSMRE KRAECRPDVV TFTSIMHLYS VRGEVESCRA VFEAMVAEGL RPNIVSYNAL MGAYAVHGMS ENALSVFQEI KRNGMFPDVV SYTCLLNSYG
401: RSGQPGKAKE VFLMMRKERR KPNVVTYNAL IDAYGSNGLL PEAVGVFRQM EQDGVKPNVV SVCTLLSACS RSGKKVNVET VLSAAEARGI KLNTAAYNSA
501: IGSFINGAEL EKAIALYQTM RRKKVKADSV TFTVLISGSC RMSKYSEAVS YLKDMEELGV PMTKEVYSSV LCAYSKQASG QVTEAESIFK QMKMDGCKPD
601: VIAYTSMLHA YNASEKWEKA CELFLEMEDN GVEPDSIACS ALMKAFNKGG QPSNVFILMD LMREKEVPFT GAVFFEIFSA CNTLQEWKRA IDLIQMMEPY
701: LPSLSIGLTN QMLHLFGKSG KVEAMMKLFY KIIASGVEIN LKTYAVLLEH LLAVGNWRKY IEVLEWMNDG GIQPSTQMYR DIISFGERSA GIEFEPLIRQ
801: KLASLRNKGV GGNLSKAH

Best Arabidopsis Sequence Match ( AT2G41720.1 )
(BLAST)

001: MATVTNFKLV TPPESSRADK PGATKASDAF QEKKSVSVNY DRGEHEVSVN IGGLRKADIP RRYRIRVEND RFQKDWSVSE VVDRLMALNR WEEVDGVLNS
101: WVGRFARKNF PVLIRELSRR GCIELCVNVF KWMKIQKNYC ARNDIYNMMI RLHARHNWVD QARGLFFEMQ KWSCKPDAET YDALINAHGR AGQWRWAMNL
201: MDDMLRAAIA PSRSTYNNLI NACGSSGNWR EALEVCKKMT DNGVGPDLVT HNIVLSAYKS GRQYSKALSY FELMKGAKVR PDTTTFNIII YCLSKLGQSS
301: QALDLFNSMR EKRAECRPDV VTFTSIMHLY SVKGEIENCR AVFEAMVAEG LKPNIVSYNA LMGAYAVHGM SGTALSVLGD IKQNGIIPDV VSYTCLLNSY
401: GRSRQPGKAK EVFLMMRKER RKPNVVTYNA LIDAYGSNGF LAEAVEIFRQ MEQDGIKPNV VSVCTLLAAC SRSKKKVNVD TVLSAAQSRG INLNTAAYNS
501: AIGSYINAAE LEKAIALYQS MRKKKVKADS VTFTILISGS CRMSKYPEAI SYLKEMEDLS IPLTKEVYSS VLCAYSKQGQ VTEAESIFNQ MKMAGCEPDV
601: IAYTSMLHAY NASEKWGKAC ELFLEMEANG IEPDSIACSA LMRAFNKGGQ PSNVFVLMDL MREKEIPFTG AVFFEIFSAC NTLQEWKRAI DLIQMMDPYL
701: PSLSIGLTNQ MLHLFGKSGK VEAMMKLFYK IIASGVGINL KTYAILLEHL LAVGNWRKYI EVLEWMSGAG IQPSNQMYRD IISFGERSAG IEFEPLIRQK
801: LESLRNKGEG LIPTFRHEGT LL

Arabidopsis Description

EMB2654EMB2654 [Source:UniProtKB/TrEMBL;Acc:A0A178VXZ9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.