Factsheet for Bra037464.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86283	Canola	plastid	93.46	98.43
CDX85360	Canola	plastid	91.59	97.03
AT5G48730.1	Thale cress	plastid	85.23	89.76
VIT_07s0005g06720.t01	Wine grape	cytosol	57.38	77.53
PGSC0003DMT400082022	Potato	plastid	62.99	69.06
Solyc01g006500.2.1	Tomato	plastid	62.8	68.85
KRH46714	Soybean	plastid	62.62	65.05
GSMUA_Achr1P15160_001	Banana	plastid	59.44	64.77
EER87934	Sorghum	plastid	55.33	60.16
Zm00001d037476_P001	Maize	plastid	55.14	59.96
HORVU7Hr1G027800.8	Barley	cytosol	54.02	59.59
Os06t0172000-01	Rice	plastid	56.82	59.49
TraesCS7B01G033900.1	Wheat	plastid	55.7	58.78
TraesCS7A01G133100.1	Wheat	plastid	55.51	58.46
Bra006974.1-P	Field mustard	cytosol, endoplasmic reticulum	37.01	39.68
Bra020748.1-P	Field mustard	plastid	32.34	35.23
Bra011847.1-P	Field mustard	plastid	21.12	23.25
Bra019526.1-P	Field mustard	cytosol	8.41	17.05
Bra035352.1-P	Field mustard	mitochondrion	14.77	16.39
Bra035290.1-P	Field mustard	plastid	21.12	14.12
Bra024454.1-P	Field mustard	plastid	20.56	13.46
Bra017881.1-P	Field mustard	plastid	17.2	13.14
Bra005366.1-P	Field mustard	cytosol, mitochondrion, nucleus	17.38	12.24
Bra015889.1-P	Field mustard	plastid	19.44	12.04
Bra018246.1-P	Field mustard	plastid	10.09	10.93
Bra004642.1-P	Field mustard	cytosol, plastid	14.95	9.78
Bra021733.1-P	Field mustard	cytosol	16.64	8.11
Bra018247.1-P	Field mustard	nucleus	3.93	6.93

Protein Annotations

EnsemblPlants:Bra037464.1	EnsemblPlants:Bra037464.1-P	EnsemblPlantsGene:Bra037464	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil
PANTHER:PTHR24015	PANTHER:PTHR24015:SF664	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375
SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI000253F982	UniProt:M4F8Q2	MapMan:35.1	:

Description

AT5G48730 (E=2e-131) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA06:+:21315706..21317404

Molecular Weight (calculated)

61271.7 Da

IEP (calculated)

9.562

GRAVY (calculated)

-0.282

Length

535 amino acids

Sequence
(BLAST)

001: MVSLSTSASH AHPLPSAHNR RPAERNVTVR CASFSPREPK HTSNDSSLAL RETRQRKWVK SKEEAKERYS KEIQDEMNSK IASRKAISII LRREATKAII
101: EKKKGPTNSK KLLPRTVLEA LHERITALRW ESALQVCKLR LLSQTYTLLI FFLILGFDSL CKVFELLREQ LWYKPNVGIY VKLIVMLGKC KQPEKAHQLF
201: QEMIGEGCVV NHEVYTALLS AYSRSGRFDD AFTLLELMKS SHNCQPDVHT YSILIKSFLQ VFAFDEVQAL LSDMRRQGIR PNTITYNTLI DAYGKAKMFV
301: EMESTLIQML GEDDCKPDSW TMNSTLRAFG GNGQIEMMEN CYEKFQSSGI EPNIRTFNIL LDSYGKTGNY KKMSAVMEFM QKYHYSWTIV TYNVVIDAFG
401: RAGDLKQMEY LFRLMQSERI KPSCVTLCSL VRAYGRAGKA DKIGGVLRFI ENSDVRLDLV FFNCLVDAYG RMEKFAEMKG VLELMEKKGF KPDKITYRTM
501: VKAYRISGMT SHVKELDGVV ESVGEAQVVL KKPDF

Best Arabidopsis Sequence Match ( AT5G48730.1 )
(BLAST)

001: MVSLSTSTSH APPLPTNRRT AERTFTVRCI SISPREPNYA ITSDKSNNTS LSLRETRQSK WLINAEDVNE RDSKEIKEDK NTKIASRKAI SIILRREATK
101: SIIEKKKGSK KLLPRTVLES LHERITALRW ESAIQVFELL REQLWYKPNV GIYVKLIVML GKCKQPEKAH ELFQEMINEG CVVNHEVYTA LVSAYSRSGR
201: FDAAFTLLER MKSSHNCQPD VHTYSILIKS FLQVFAFDKV QDLLSDMRRQ GIRPNTITYN TLIDAYGKAK MFVEMESTLI QMLGEDDCKP DSWTMNSTLR
301: AFGGNGQIEM MENCYEKFQS SGIEPNIRTF NILLDSYGKS GNYKKMSAVM EYMQKYHYSW TIVTYNVVID AFGRAGDLKQ MEYLFRLMQS ERIFPSCVTL
401: CSLVRAYGRA SKADKIGGVL RFIENSDIRL DLVFFNCLVD AYGRMEKFAE MKGVLELMEK KGFKPDKITY RTMVKAYRIS GMTTHVKELH GVVESVGEAQ
501: VVVKKPDF

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.