CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g06720.t01	Wine grape	cytosol	58.25	75.76
PGSC0003DMT400082022	Potato	plastid	64.27	67.83
Solyc01g006500.2.1	Tomato	plastid	63.88	67.42
CDX86283	Canola	plastid	64.85	65.75
CDX85360	Canola	plastid	64.08	65.35
AT5G48730.1	Thale cress	plastid	64.08	64.96
GSMUA_Achr1P15160_001	Banana	plastid	60.97	63.95
Bra037464.1-P	Field mustard	plastid	65.05	62.62
EER87934	Sorghum	plastid	59.81	62.6
Zm00001d037476_P001	Maize	plastid	59.22	61.99
Os06t0172000-01	Rice	plastid	60.97	61.45
HORVU7Hr1G027800.8	Barley	cytosol	57.67	61.24
TraesCS7B01G033900.1	Wheat	plastid	60.0	60.95
TraesCS7A01G133100.1	Wheat	plastid	59.81	60.63
KRH14115	Soybean	plastid	36.5	39.09
KRH02371	Soybean	plastid	36.89	38.93
KRH02451	Soybean	plastid	36.89	38.93
KRH37687	Soybean	plastid	32.43	34.43
KRH59429	Soybean	plastid	20.19	20.68
KRH43291	Soybean	plastid	20.58	20.15
KRH77730	Soybean	plastid	17.28	17.02
KRH27783	Soybean	cytosol, plastid	17.09	16.86
KRH27571	Soybean	plastid	17.67	16.85
KRG90712	Soybean	cytosol, endoplasmic reticulum, plastid	18.45	15.2
KRG90623	Soybean	nucleus	15.73	14.41
KRH60945	Soybean	plastid	19.03	14.37
KRG91073	Soybean	plastid	21.75	14.11
KRH36131	Soybean	plastid	15.15	14.1
KRH51622	Soybean	cytosol, plastid	19.03	14.08
KRH57931	Soybean	cytosol	2.91	14.02
KRH12254	Soybean	plastid	21.55	13.39
KRH37281	Soybean	plastid	20.97	13.01
KRH03384	Soybean	nucleus	21.16	12.69
KRH56998	Soybean	nucleus	20.78	12.47
KRH66918	Soybean	cytosol	18.45	11.35
KRH45156	Soybean	plastid	17.48	10.25
KRH01436	Soybean	plastid	17.28	10.17
KRG95241	Soybean	plastid	13.4	10.13

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100782157	MapMan:35.1	UniProt:A0A0R0IXF8	EMBL:ACUP02005354	ncoils:Coil
EnsemblPlantsGene:GLYMA_08G352500	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH46714	ProteinID:KRH46714
ProteinID:KRH46714.1	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF664	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002337CB2	SEG:seg

Description

hypothetical protein

Coordinates

chr8:+:46546127..46550544

Molecular Weight (calculated)

58489.3 Da

IEP (calculated)

9.570

GRAVY (calculated)

-0.340

Length

515 amino acids

Sequence
(BLAST)

001: MASLSTTAPG VPPFPPPTAA RRAASRRFQA SPRLDPEPDP EPPSPSSLSA SLVVTDERTR RIARELEKLK ARERKEMRNR KVASQKAVSV ILWREATKAM
101: IDKSGGGRKK KGPINSKKLL PRTVLEALHE RVTALRWESA LKVFELLHEQ IWYKPDTGVY IKLIVMLGKC KQPEKAHELF QAMVDEGCVL DCESYTALLS
201: AYSRSGLLDK AFSLLEEMKN TPGCQPDVQT YSILLKSCLQ VFAFDKIQSL LSDMTNRGIK PNTVTYNTLI DAYGKARKFS EMESILVEML ADRYCQPDVW
301: TMNSTLRAFG NIGQIETMEK CYEKFQNAGI QPNVQTFNIL LDSYGKAQDY KKMSAVMEYM QKYHYSWTIV TFNIVIDAFG KAGDLKQMEY LFRLMRSERI
401: KPSCVTLCSL VRAYARAGKP EKISGVLRFV ENSDVLLDTV FFNCLVDAYA RLGCLAEMKG VLEMMKQNGC KPDIVTYRTM IKTYTYKGMD SHAKELRELL
501: PTVNRPPLKR DKPDF

Best Arabidopsis Sequence Match ( AT5G48730.1 )
(BLAST)

001: MVSLSTSTSH APPLPTNRRT AERTFTVRCI SISPREPNYA ITSDKSNNTS LSLRETRQSK WLINAEDVNE RDSKEIKEDK NTKIASRKAI SIILRREATK
101: SIIEKKKGSK KLLPRTVLES LHERITALRW ESAIQVFELL REQLWYKPNV GIYVKLIVML GKCKQPEKAH ELFQEMINEG CVVNHEVYTA LVSAYSRSGR
201: FDAAFTLLER MKSSHNCQPD VHTYSILIKS FLQVFAFDKV QDLLSDMRRQ GIRPNTITYN TLIDAYGKAK MFVEMESTLI QMLGEDDCKP DSWTMNSTLR
301: AFGGNGQIEM MENCYEKFQS SGIEPNIRTF NILLDSYGKS GNYKKMSAVM EYMQKYHYSW TIVTYNVVID AFGRAGDLKQ MEYLFRLMQS ERIFPSCVTL
401: CSLVRAYGRA SKADKIGGVL RFIENSDIRL DLVFFNCLVD AYGRMEKFAE MKGVLELMEK KGFKPDKITY RTMVKAYRIS GMTTHVKELH GVVESVGEAQ
501: VVVKKPDF

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.