CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71198	Canola	cytosol	64.26	61.31
GSMUA_Achr6P16830_001	Banana	cytosol	59.07	56.76
VIT_03s0091g00440.t01	Wine grape	plastid	75.0	49.94
KRG91073	Soybean	plastid	71.67	48.74
CDY32056	Canola	plastid	70.93	47.34
Solyc01g107320.2.1	Tomato	plastid	70.37	46.4
AT5G02860.2	Thale cress	plastid	70.19	46.28
Bra035290.1-P	Field mustard	plastid	68.52	46.25
PGSC0003DMT400066525	Potato	plastid	70.37	46.17
TraesCS2A01G194800.1	Wheat	endoplasmic reticulum, extracellular	38.7	44.95
HORVU2Hr1G035060.2	Barley	cytosol	51.85	44.8
KXG36606	Sorghum	plastid	56.85	39.72
TraesCS2D01G193100.1	Wheat	plastid	56.85	38.71
TraesCS2B01G212000.1	Wheat	plastid	56.3	38.24
Os07t0590600-00	Rice	plastid	55.19	38.01
Zm00001d022003_P001	Maize	plastid	55.56	37.74
KRH12254	Soybean	plastid	37.78	24.61
KRH37281	Soybean	plastid	37.22	24.22
KRH46714	Soybean	plastid	16.85	17.67
KRH14115	Soybean	plastid	15.56	17.46
KRH37687	Soybean	plastid	15.19	16.91
KRH27783	Soybean	cytosol, plastid	16.3	16.86
KRH02371	Soybean	plastid	15.19	16.8
KRH02451	Soybean	plastid	15.19	16.8
KRH77730	Soybean	plastid	15.74	16.25
KRG90712	Soybean	cytosol, endoplasmic reticulum, plastid	17.96	15.52
KRH60945	Soybean	plastid	19.44	15.4
KRH51622	Soybean	cytosol, plastid	19.81	15.37
KRH36131	Soybean	plastid	13.52	13.2
KRG90623	Soybean	nucleus	13.7	13.17
KRH59429	Soybean	plastid	12.22	13.12
KRH03384	Soybean	nucleus	20.0	12.57
KRH56998	Soybean	nucleus	19.26	12.12
KRH43291	Soybean	plastid	11.67	11.98
KRH66918	Soybean	cytosol	16.67	10.75
KRH45156	Soybean	plastid	16.3	10.02
KRH01436	Soybean	plastid	16.11	9.94
KRG95241	Soybean	plastid	10.93	8.66
KRH57931	Soybean	cytosol	1.48	7.48

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A0R0HI75	EMBL:ACUP02006727	EnsemblPlantsGene:GLYMA_11G001100	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH27571	ProteinID:KRH27571
ProteinID:KRH27571.1	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF308	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0006EDA306
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:58825..61239

Molecular Weight (calculated)

60692.1 Da

IEP (calculated)

7.515

GRAVY (calculated)

-0.278

Length

540 amino acids

Sequence
(BLAST)

001: MEMVEKVALP LLLPNPPPPS PSPSSSSKPN SVGMTSIPPI PPINTLIHDL NSNSSSRHRI SLGKSLDPNR GKPWSPHRLS PTGGLLEEAL DLKTQMVHKG
101: IKPDVFTYTT LLSGFEKAGK DDFAIQVFLE MRAVGCKPNI CTFNALIKMH GNRGKFAEMM KVFDDIKLCN CSPDIVTWNT LLAVFGQNGM DSQVSGIFKE
201: MKRAGFVAER DTFNTLISAY SRCGSFDQAM AVYKSMLEAG VVPDLSTYNA VLAALARGGL WEQSEKVLAE MEDGRCKPNE LSYSSLLHAY ANGKEIERMN
301: AFAEEIYSGS VETHAVLLKT LVLVNSKSDL LIETERAFLE LRRRGISPDI TTLNAMLSIY GRKQMVAKAH EILNFMHETR FTPSLTTYNS LMYMYSRSEN
401: FQKSEEILRE VLEKGMKPDR ISYNTVIYAY CRNGRMKEAS RIFSEMKDSA LVPDVVTYNT FIATYAADSM FAEAIDVVRY MIKQGCKPDQ NTYNSIVDWY
501: CKLDQRHEAN SFVKNLSNLD PHVSKEEESR LLERIAKMWS

Best Arabidopsis Sequence Match ( AT5G02860.3 )
(BLAST)

001: MADKLALPLL LPCTPSSKPY SHDQNHHISR TPFLTTSLSS PPPPPVEPLL HDVFLHQNPN SRQPISSQTS RNRNRTRIGK SRDPNLGKPW SYHGLSPQGQ
101: QVLRSLIEPN FDSGQLDSVL SELFEPFKDK PESTSSELLA FLKGLGFHKK FDLALRAFDW FMKQKDYQSM LDNSVVAIII SMLGKEGRVS SAANMFNGLQ
201: EDGFSLDVYS YTSLISAFAN SGRYREAVNV FKKMEEDGCK PTLITYNVIL NVFGKMGTPW NKITSLVEKM KSDGIAPDAY TYNTLITCCK RGSLHQEAAQ
301: VFEEMKAAGF SYDKVTYNAL LDVYGKSHRP KEAMKVLNEM VLNGFSPSIV TYNSLISAYA RDGMLDEAME LKNQMAEKGT KPDVFTYTTL LSGFERAGKV
401: ESAMSIFEEM RNAGCKPNIC TFNAFIKMYG NRGKFTEMMK IFDEINVCGL SPDIVTWNTL LAVFGQNGMD SEVSGVFKEM KRAGFVPERE TFNTLISAYS
501: RCGSFEQAMT VYRRMLDAGV TPDLSTYNTV LAALARGGMW EQSEKVLAEM EDGRCKPNEL TYCSLLHAYA NGKEIGLMHS LAEEVYSGVI EPRAVLLKTL
601: VLVCSKCDLL PEAERAFSEL KERGFSPDIT TLNSMVSIYG RRQMVAKANG VLDYMKERGF TPSMATYNSL MYMHSRSADF GKSEEILREI LAKGIKPDII
701: SYNTVIYAYC RNTRMRDASR IFSEMRNSGI VPDVITYNTF IGSYAADSMF EEAIGVVRYM IKHGCRPNQN TYNSIVDGYC KLNRKDEAKL FVEDLRNLDP
801: HAPKGEDLRL LERIVKKWP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g02860 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYZ9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.