CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59429	Soybean	plastid	90.11	94.23
VIT_07s0031g01360.t01	Wine grape	plastid	63.12	67.89
CDY41990	Canola	plastid	59.51	66.45
PGSC0003DMT400033331	Potato	plastid	59.51	65.62
Solyc04g054270.2.1	Tomato	plastid	59.51	65.48
CDY42639	Canola	plastid	59.89	65.22
Bra011847.1-P	Field mustard	plastid	58.94	63.79
GSMUA_Achr5P22880_001	Banana	plastid	57.79	59.61
KXG30749	Sorghum	plastid	54.75	57.83
Zm00001d052240_P001	Maize	plastid	54.37	57.31
AT4G39620.1	Thale cress	plastid	58.17	54.35
TraesCS6D01G282900.1	Wheat	plastid	54.37	52.96
Os02t0750400-01	Rice	cytosol	21.29	52.83
TraesCS6A01G303300.1	Wheat	plastid	54.18	52.78
HORVU6Hr1G075250.5	Barley	plastid	48.67	51.2
TraesCS6B01G332800.1	Wheat	plastid	53.42	49.65
KRH02451	Soybean	plastid	20.15	21.72
KRH02371	Soybean	plastid	19.58	21.11
KRH14115	Soybean	plastid	19.01	20.79
KRH46714	Soybean	plastid	20.15	20.58
KRH37687	Soybean	plastid	18.06	19.59
KRH27783	Soybean	cytosol, plastid	16.16	16.28
KRH77730	Soybean	plastid	15.78	15.87
KRG90712	Soybean	cytosol, endoplasmic reticulum, plastid	18.25	15.36
KRH51622	Soybean	cytosol, plastid	19.39	14.66
KRH57931	Soybean	cytosol	2.85	14.02
KRH60945	Soybean	plastid	18.06	13.93
KRH36131	Soybean	plastid	14.07	13.38
KRG90623	Soybean	nucleus	13.88	12.99
KRH27571	Soybean	plastid	11.98	11.67
KRG91073	Soybean	plastid	16.92	11.21
KRH56998	Soybean	nucleus	17.11	10.49
KRH03384	Soybean	nucleus	16.92	10.36
KRH12254	Soybean	plastid	15.59	9.89
KRH66918	Soybean	cytosol	15.4	9.68
KRH37281	Soybean	plastid	15.21	9.64
KRH01436	Soybean	plastid	15.02	9.03
KRH45156	Soybean	plastid	14.64	8.77
KRG95241	Soybean	plastid	10.46	8.08

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100795589	MapMan:35.1	EMBL:ACUP02004851	EnsemblPlantsGene:GLYMA_08G140300	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	UniProt:K7L6M2	EnsemblPlants:KRH43291	ProteinID:KRH43291	ProteinID:KRH43291.1
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF490
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000296D9CF	SEG:seg

Description

hypothetical protein

Coordinates

chr8:-:10735544..10739238

Molecular Weight (calculated)

58804.6 Da

IEP (calculated)

9.584

GRAVY (calculated)

-0.367

Length

526 amino acids

Sequence
(BLAST)

001: MSSLSSCSSS PSFAASYGTI THPRAAPLSR ISCGGPRPPK SKKSNLNSEA QELVRLLTSK IRSNDKEVLL KTLNKYVKQV RTQHCFLLFE ELGKHDNWLQ
101: CLEVFRWMQK QRWYIADNGI YSKLISVMGK KGQTRMAMWL FSEMRNTGCR PDTSVYNALI TAHLRSRDKI KALAKAIGYF QKMKGMERCK PNIVTYNILL
201: RAFAQARNVE QVNSLFKDLD ESIVSPDIYT FNGVMDAYGK NGMIREMEAV LARMKSNQCK PDLITFNLLI DSYGKKQAFG KMEQVFKSLL HSKERPSLPT
301: FNSMILNYGK ARLKDKAEDV FKKMTDMGYT LSFVTHESMI YMYGFCDCVS RAAQLFDELV ESKVHIKVST LNAMLDVYCL NGLPQEADSL FERAISIKIH
401: PDSSTFKLLY KAYTKANQKE LLDKLLKHMD KDGIIPNKRF FLDALGAVAS LPANSESANA ATDSNTANSE SANAATDSNA SNSESANAAT DSNASNSESA
501: YAATDSNNPQ DFAKLATGVK NILAHR

Best Arabidopsis Sequence Match ( AT4G39620.1 )
(BLAST)

001: MDYLLTSPSS LRFSDFISSI PKETDHKWLR FSVNLGDARR STRTRITCGA ISSRRKLAER ESAERENRVL VRSLMSRISD REPLVKTLDK YVKVVRCDHC
101: FLLFEELGKS DKWLQCLEVF RWMQKQRWYI PDNGVYSKLI SVMGKKGQTR MAMWLFSEMK NSGCRPDASV YNALITAHLH TRDKAKALEK VRGYLDKMKG
201: IERCQPNVVT YNILLRAFAQ SGKVDQVNAL FKDLDMSPVS PDVYTFNGVM DAYGKNGMIK EMEAVLTRMR SNECKPDIIT FNVLIDSYGK KQEFEKMEQT
301: FKSLMRSKEK PTLPTFNSMI INYGKARMID KAEWVFKKMN DMNYIPSFIT YECMIMMYGY CGSVSRAREI FEEVGESDRV LKASTLNAML EVYCRNGLYI
401: EADKLFHNAS AFRVHPDAST YKFLYKAYTK ADMKEQVQIL MKKMEKDGIV PNKRFFLEAL EVFGSRLPGS GSENRKSTRS SRSRDSPKGR GGNQLTEFQD
501: KDNKHVFRAV QDCRKNYLEN LSGHDKGSRD ESRKPSQEKQ PLFASDQNNM MIKEKKELFT RVL

Arabidopsis Description

EMB2453Pentatricopeptide repeat-containing protein At4g39620, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SV96]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.